SRR3552398_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552398_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	879731
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT	3912	0.4446813855599041	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	2222	0.25257720826025226	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	2104	0.2391640171825251	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	1531	0.1740304706779686	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCC	1376	0.15641144849959818	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1367	0.15538840850214442	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1154	0.1311764618957386	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	985	0.1119660441657734	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGATCG	30	2.1649194E-6	45.000004	1
GTCGATT	25	3.890057E-5	45.0	35
TCGATAG	25	3.890057E-5	45.0	1
AGCGGTA	20	7.032385E-4	45.0	10
GATATCC	20	7.032385E-4	45.0	29
GCGATAT	40	6.8121153E-9	45.0	9
CCGGTCA	20	7.032385E-4	45.0	34
CAATACG	25	3.890057E-5	45.0	1
CGATACG	20	7.032385E-4	45.0	10
TCGGTAA	20	7.032385E-4	45.0	28
TCGAACG	35	1.2115015E-7	45.0	1
CGAGACA	125	0.0	43.199997	22
GCTAGCG	60	3.6379788E-12	41.250004	1
ATAACGG	50	1.0804797E-9	40.5	2
TATTGCG	45	1.9274012E-8	40.0	1
AATACGG	90	0.0	40.0	2
TCAACGT	45	1.9274012E-8	40.0	24
CGTATGG	40	3.4569894E-7	39.375	2
AACGAGC	80	0.0	39.375	15
CCTCGTG	150	0.0	39.0	15