SRR3552397_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552397_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1599243
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	4818	0.3012675372035394	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	4691	0.29332627999622324	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	3746	0.23423582282367345	No Hit
TCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	3419	0.21378864875444195	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC	2812	0.17583319107852902	No Hit
ACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1985	0.1241212248545093	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1620	0.10129792658151388	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	20	7.034115E-4	45.000004	1
CTAGACG	40	6.8175723E-9	45.000004	1
ACGATCG	20	7.034115E-4	45.000004	33
TCGACGT	30	2.1660362E-6	45.000004	26
GCGCGAC	45	3.8562575E-10	45.0	9
CGCTAAG	60	3.6379788E-12	41.250004	21
ACGGATC	60	3.6379788E-12	41.250004	5
TTTCGCG	45	1.9290383E-8	40.0	1
CGTGCGG	170	0.0	39.705883	2
GTCGCTC	40	3.459354E-7	39.375004	1
CGCTCCG	40	3.459354E-7	39.375004	21
ACGTGCG	40	3.459354E-7	39.375004	1
CTATCGT	35	6.249824E-6	38.571426	12
CGGCCGC	35	6.249824E-6	38.571426	22
TAGCGCG	70	0.0	38.571426	1
GTACGGC	35	6.249824E-6	38.571426	9
CGTTTTT	2070	0.0	38.369568	1
TTGCGCG	95	0.0	37.894737	1
CAACGCG	30	1.1401214E-4	37.500004	1
ACCGCTA	30	1.1401214E-4	37.500004	26