SRR3552392_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552392_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1320310
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	6028	0.4565594443729124	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	4667	0.3534775923836069	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	3809	0.2884928539509661	No Hit
TCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	2501	0.18942521074596116	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC	1794	0.13587718035915808	No Hit
ACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	1538	0.11648779453310207	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1503	0.11383690193969596	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1341	0.10156705622164491	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACAG	20	7.0336694E-4	45.0	1
TATAGCG	30	2.1657488E-6	44.999996	1
TATACGG	75	0.0	42.0	2
ATACTCG	70	0.0	41.785713	44
CGAACTT	60	3.6379788E-12	41.249996	14
TATTGCG	110	0.0	40.909092	1
CGAATAT	210	0.0	40.714287	14
TCCCGAT	50	1.0822987E-9	40.500004	39
GTACGAG	80	0.0	39.375	1
GAATCGT	35	6.248996E-6	38.571426	38
CGTCTAC	35	6.248996E-6	38.571426	41
TACGATA	35	6.248996E-6	38.571426	31
CGCCCTA	35	6.248996E-6	38.571426	17
GCTACGA	220	0.0	37.840908	10
CCCGTAA	30	1.1400142E-4	37.499996	32
CAACTCG	60	1.5643309E-10	37.499996	9
CGCAAAC	60	1.5643309E-10	37.499996	20
TAGGGCG	265	0.0	37.35849	5
TACGAAT	230	0.0	37.173916	12
ATAAGGG	855	0.0	37.105263	3