SRR3552391_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552391_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1626464
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGC	5707	0.35088388061463394	RNA PCR Primer, Index 14 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGCT	3500	0.21519074507643574	RNA PCR Primer, Index 16 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGC	3123	0.19201162767820254	RNA PCR Primer, Index 16 (95% over 23bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2669	0.16409831388828772	No Hit
TCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTGC	2295	0.14110364570012002	RNA PCR Primer, Index 14 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1733	0.10655016034784662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTA	20	7.034151E-4	45.000004	23
GTATACG	35	1.2123382E-7	45.000004	1
ACGCGAA	25	3.8915234E-5	45.0	37
TAATACG	30	2.1660599E-6	44.999996	1
TTTAGCG	225	0.0	41.0	1
CCCTCGT	260	0.0	40.673077	14
TGTTACG	50	1.0822987E-9	40.5	1
CGTTAGG	310	0.0	39.919353	2
TAAACGG	115	0.0	39.130432	2
ATTAGCG	140	0.0	38.57143	1
GGTCGAA	35	6.2498893E-6	38.57143	8
AAATGCG	35	6.2498893E-6	38.57143	1
ACTATGC	275	0.0	38.454544	8
CGTGTAC	275	0.0	38.454544	18
TATACGG	100	0.0	38.25	2
TTAGCGG	535	0.0	37.850468	2
TATGCGT	30	1.1401303E-4	37.499996	11
TCGATCA	85	0.0	37.058823	17
TTATGCG	80	0.0	36.562504	1
CCTCGTG	290	0.0	36.46552	15