SRR3552386_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552386_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2169054
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	6027	0.2778630684160007	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	4379	0.2018852458260606	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	4329	0.19958009344165703	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	3430	0.1581334535700817	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2815	0.12978007924191837	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2781	0.128212575620524	No Hit
TCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2416	0.11138496321437825	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2208	0.10179552929525959	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATCG	25	3.891954E-5	45.0	1
TTATCCG	35	1.2125929E-7	45.0	1
CGTAGAT	20	7.034673E-4	45.0	12
ACGTCGA	20	7.034673E-4	45.0	28
TCGTAAG	75	0.0	42.000004	1
ACGTTAG	65	0.0	41.53846	1
TCGATAG	55	6.184564E-11	40.909092	1
ATTCGCG	40	3.460118E-7	39.375	1
ACACGAC	890	0.0	38.679775	26
AACACGT	855	0.0	38.157894	41
CGAATAT	230	0.0	38.152172	14
GCTACGA	220	0.0	37.840908	10
GCGAGAC	940	0.0	37.57979	21
TCTCGAC	30	1.1402556E-4	37.500004	31
CGTTTAG	30	1.1402556E-4	37.500004	3
CGAGACA	945	0.0	37.380955	22
ACACGTG	875	0.0	37.285713	42
CACGACC	930	0.0	37.258064	27
CGTCATA	85	0.0	37.058823	38
CTACGAA	225	0.0	37.0	11