SRR3552384_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552384_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1340176
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	5454	0.40696147371688496	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	4203	0.3136155251250582	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	3277	0.2445201227301489	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	3055	0.22795513425102376	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2140	0.15968051957354856	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2010	0.14998030109478158	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1672	0.12475973304998747	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1633	0.12184966750635737	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1478	0.11028402239705828	No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1477	0.11020940533183701	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	1377	0.10274769880970858	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1377	0.10274769880970858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGA	20	7.033706E-4	45.0	15
CCGTACG	20	7.033706E-4	45.0	1
ACGCTAG	40	6.8157533E-9	45.0	1
ATCGCGA	20	7.033706E-4	45.0	25
TCGCGAT	20	7.033706E-4	45.0	26
ACGTTGA	30	2.1657725E-6	44.999996	33
GCTACGA	255	0.0	40.588234	10
CCAACGG	45	1.9286745E-8	40.0	2
AAGCTAC	260	0.0	39.80769	8
CGAGACA	40	3.4587902E-7	39.375	22
CGAATAT	265	0.0	39.056602	14
AGTACGG	185	0.0	38.91892	2
ACACGCA	35	6.2490653E-6	38.571426	29
TTTGTCG	35	6.2490653E-6	38.571426	1
TACGAAT	270	0.0	38.333336	12
CGAAAGG	195	0.0	38.07692	2
AATATAC	300	0.0	37.5	16
ACTATAC	30	1.1400232E-4	37.499996	26
ATTAGCG	60	1.5643309E-10	37.499996	1
CGACGTT	30	1.1400232E-4	37.499996	27