##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552384_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1340176 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.431171726698583 31.0 31.0 34.0 30.0 34.0 2 31.645824876732608 31.0 31.0 34.0 30.0 34.0 3 31.717782589749405 31.0 31.0 34.0 30.0 34.0 4 35.43201713804754 37.0 35.0 37.0 33.0 37.0 5 35.23395061544156 37.0 35.0 37.0 33.0 37.0 6 35.323147855207075 37.0 35.0 37.0 32.0 37.0 7 35.665458865104284 37.0 35.0 37.0 35.0 37.0 8 35.66630949964781 37.0 35.0 37.0 35.0 37.0 9 37.14716276071203 39.0 37.0 39.0 34.0 39.0 10 36.73575410990795 39.0 37.0 39.0 32.0 39.0 11 36.482544083762136 38.0 35.0 39.0 32.0 39.0 12 36.445672807153684 38.0 35.0 39.0 32.0 39.0 13 36.18887220782942 38.0 35.0 39.0 32.0 39.0 14 37.39332968207161 39.0 36.0 41.0 32.0 41.0 15 37.49343742911379 39.0 36.0 41.0 32.0 41.0 16 37.472584944067044 39.0 36.0 41.0 32.0 41.0 17 37.498603168539056 39.0 36.0 41.0 32.0 41.0 18 37.457238452262985 39.0 36.0 41.0 32.0 41.0 19 37.44364695383293 39.0 36.0 41.0 32.0 41.0 20 37.05523080550614 39.0 35.0 41.0 31.0 41.0 21 37.133454859660226 39.0 35.0 40.0 31.0 41.0 22 37.21487849357099 39.0 35.0 40.0 32.0 41.0 23 37.066104004250185 39.0 35.0 40.0 31.0 41.0 24 37.10922446007092 39.0 35.0 40.0 31.0 41.0 25 37.10326852592495 39.0 35.0 40.0 31.0 41.0 26 37.06574808084908 39.0 35.0 40.0 31.0 41.0 27 36.88215876123733 39.0 35.0 40.0 31.0 41.0 28 36.859891536633995 39.0 35.0 40.0 31.0 41.0 29 36.91460375353685 39.0 35.0 40.0 31.0 41.0 30 36.78756073829109 39.0 35.0 40.0 31.0 41.0 31 36.68053822781486 39.0 35.0 40.0 31.0 41.0 32 36.40743827676365 39.0 35.0 40.0 30.0 41.0 33 36.319998268884085 38.0 35.0 40.0 30.0 41.0 34 36.273264108594695 38.0 35.0 40.0 30.0 41.0 35 36.103101383698856 38.0 35.0 40.0 30.0 41.0 36 36.15626529649837 38.0 35.0 40.0 30.0 41.0 37 36.186588179462994 38.0 35.0 40.0 30.0 41.0 38 36.11703313594632 38.0 35.0 40.0 30.0 41.0 39 36.06722922959373 38.0 35.0 40.0 30.0 41.0 40 35.94146888169912 38.0 35.0 40.0 29.0 41.0 41 35.85192541875097 38.0 35.0 40.0 29.0 41.0 42 35.84749316507683 38.0 35.0 40.0 29.0 41.0 43 35.78409029858765 38.0 34.0 40.0 29.0 41.0 44 35.70838009336087 38.0 34.0 40.0 29.0 41.0 45 35.63887877413116 38.0 34.0 40.0 29.0 41.0 46 35.497780142309665 38.0 34.0 40.0 28.0 41.0 47 35.40220687432098 38.0 34.0 40.0 28.0 41.0 48 35.32312920094077 37.0 34.0 40.0 28.0 41.0 49 35.263566874798535 37.0 34.0 40.0 28.0 41.0 50 35.148587946657756 37.0 34.0 40.0 27.0 41.0 51 33.93489362591182 36.0 32.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 35.0 9 98.0 10 104.0 11 90.0 12 46.0 13 41.0 14 32.0 15 69.0 16 121.0 17 256.0 18 518.0 19 908.0 20 1504.0 21 2376.0 22 3443.0 23 5044.0 24 7165.0 25 9151.0 26 11608.0 27 14690.0 28 18822.0 29 23714.0 30 30191.0 31 38779.0 32 51221.0 33 68380.0 34 103147.0 35 117521.0 36 130344.0 37 177438.0 38 254292.0 39 268994.0 40 30.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.119112713554046 21.320259428612363 24.712724298898056 10.847903558935542 2 30.96063502107186 25.773182029822948 25.366668258497395 17.899514690607802 3 31.482805243490407 24.486559974212344 26.822148732703766 17.208486049593485 4 29.53753835317152 26.07948508255632 25.47172908632896 18.911247477943196 5 25.71774155036353 30.234088657012215 24.332774202791274 19.715395589832976 6 25.572462124377694 36.129284511885004 23.336114062630582 14.962139301106719 7 80.94757703465814 6.630099330237223 7.645339119638017 4.776984515466625 8 81.26343107173983 5.973319922159478 7.58504853093922 5.178200475161471 9 74.97336170771601 8.575813922947434 9.95772197084562 6.493102398490945 10 40.3329861152565 26.10291484103581 17.352944687861893 16.2111543558458 11 29.637674454698487 26.040982676902136 23.824557371569107 20.496785496830267 12 26.311320304198855 23.58309654851303 30.205211852771573 19.900371294516543 13 23.183372930122612 25.09938993087475 31.37035732620193 20.346879812800704 14 20.302557276059265 27.648756581225154 29.872046656558542 22.176639486157043 15 20.400902568020918 26.517114170079154 32.26397129929203 20.818011962607898 16 22.107618700827352 25.79377633982402 29.89234249829873 22.206262461049892 17 22.413623285299842 25.982035195377325 27.65853141676914 23.945810102553693 18 21.89593008679457 26.679928606391996 29.769373574814058 21.65476773199938 19 23.375884958393524 26.70044829932785 27.728522223946705 22.195144518331922 20 24.161378803977986 26.92803034825277 27.71315110851112 21.19743973925813 21 23.81791645276441 27.73053688470768 27.87514475710653 20.576401905421378 22 22.14686727713375 26.0397888038586 26.900869736512217 24.912474182495433 23 22.431829849213834 26.235658600064472 27.808810186124806 23.52370136459689 24 22.402729193777535 26.081201275056408 28.323966404412555 23.1921031267535 25 21.293098816871815 27.68487124079225 26.74096536574301 24.281064576592925 26 20.573193371616863 27.623759864376023 28.54729528061986 23.255751483387257 27 21.094468189252755 27.48049509915116 29.004847124556775 22.420189587039314 28 18.867596494788742 26.8510255369444 30.466819283437403 23.814558684829457 29 20.54692816465897 25.30055753871133 28.898368572486 25.254145724143694 30 21.59679027232244 26.019269110922743 28.58266376953475 23.801276847220066 31 23.01951385489667 27.386328362841894 26.303187044089732 23.290970738171705 32 22.06307231289025 27.884024187867862 26.480477191055503 23.572426308186387 33 21.917643652773965 27.41804061556094 25.836009598739267 24.828306132925825 34 20.933668413700886 25.73065030264682 28.863000083571112 24.472681200081183 35 21.540678239276033 25.425391888826542 27.809705590907463 25.224224280989958 36 21.711476701567555 28.327995725934503 28.25972111125703 21.700806461240912 37 21.846682823748523 27.270074975227132 29.011264192165804 21.87197800885854 38 20.47186339704636 28.71063203638925 26.321393608003724 24.496110958560667 39 23.001754993374004 25.866378744284336 26.83363976074784 24.29822650159382 40 23.264332445887703 25.628872625684984 28.15413796396891 22.9526569644584 41 20.333374123995654 26.96086185695013 27.591749143396093 25.114014875658125 42 20.42821241389191 26.940416781079502 28.972836403576846 23.65853440145175 43 21.574927472212604 24.085866333974046 30.069408794068842 24.269797399744512 44 20.59811547140077 24.188539415718534 28.506405128878594 26.706939984002105 45 21.943013454949202 23.828959778417165 27.60144936187486 26.626577404758777 46 21.97159179092895 25.733933453516556 28.46200797507193 23.832466780482562 47 20.75406513771326 25.22668664414226 30.54173481691957 23.477513401224915 48 19.617274149066986 25.4217356526307 30.140444240159503 24.820545958142812 49 21.1387907259942 24.94948424684519 30.202973340814935 23.708751686345675 50 20.149443058225188 23.949391721684314 29.937187354496725 25.963977865593773 51 20.56259774835544 23.34133725719607 27.71934432492449 28.376720669524 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 408.0 1 869.0 2 1330.0 3 2389.5 4 3449.0 5 2630.0 6 1811.0 7 1883.0 8 1955.0 9 2101.0 10 2247.0 11 2316.5 12 2386.0 13 2723.0 14 3060.0 15 3193.0 16 3326.0 17 3372.0 18 3418.0 19 3536.0 20 3654.0 21 4009.0 22 4364.0 23 5134.5 24 5905.0 25 8941.5 26 12715.0 27 13452.0 28 16885.5 29 20319.0 30 23165.5 31 26012.0 32 27985.5 33 29959.0 34 33207.0 35 36455.0 36 40858.5 37 45262.0 38 47291.5 39 49321.0 40 55694.0 41 62067.0 42 70352.0 43 78637.0 44 92066.5 45 105496.0 46 121625.5 47 137755.0 48 134344.0 49 130933.0 50 113693.0 51 96453.0 52 85847.0 53 75241.0 54 69772.0 55 64303.0 56 61308.0 57 58313.0 58 57122.5 59 55932.0 60 53901.5 61 51871.0 62 47793.0 63 43715.0 64 38263.5 65 32812.0 66 29218.0 67 25624.0 68 22286.5 69 18949.0 70 15519.0 71 12089.0 72 10550.5 73 9012.0 74 7122.5 75 3939.0 76 2645.0 77 2106.5 78 1568.0 79 1171.0 80 774.0 81 556.0 82 338.0 83 255.0 84 172.0 85 128.5 86 85.0 87 71.0 88 57.0 89 41.0 90 25.0 91 14.0 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1340176.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.81843470850914 #Duplication Level Percentage of deduplicated Percentage of total 1 71.1989055030615 18.38244293048105 2 11.60743723283591 5.993717206581838 3 4.632694845939798 3.588267882130304 4 2.2570266834510857 2.3309158424817915 5 1.3760424388437 1.7763630931711873 6 0.8344249913497553 1.2926128294987178 7 0.6049556412731862 1.0933305408029226 8 0.45604007085361786 0.9419392635038412 9 0.3700531217658498 0.8598773126692419 >10 5.3525336365232095 35.82277510447015 >50 1.1922954219151418 19.926884160743715 >100 0.10881500829446429 4.82965731964046 >500 0.004680215409506065 0.7946466663114614 >1k 0.0038026750202236775 1.9546706916435321 >5k 2.9251346309412907E-4 0.4118991558698642 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 5454 0.40696147371688496 No Hit CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT 4203 0.3136155251250582 No Hit CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 3277 0.2445201227301489 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 3055 0.22795513425102376 No Hit TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 2140 0.15968051957354856 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2010 0.14998030109478158 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1672 0.12475973304998747 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1633 0.12184966750635737 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1478 0.11028402239705828 No Hit ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 1477 0.11020940533183701 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC 1377 0.10274769880970858 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1377 0.10274769880970858 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.35167022838791323 0.0 2 0.0 0.0 0.0 1.3727301488759684 0.0 3 0.0 0.0 0.0 1.8527417294444908 0.0 4 0.0 0.0 0.0 2.4198314251262523 0.0 5 0.0 0.0 0.0 3.7945762347631953 0.0 6 0.0 0.0 0.0 4.535225224149664 0.0 7 0.0 0.0 0.0 5.3328070342999725 0.0 8 0.0 0.0 0.0 6.641366507085636 0.0 9 0.0 0.0 0.0 7.110782464392736 0.0 10 0.0 0.0 0.0 8.314057258151168 0.0 11 0.0 0.0 0.0 10.092778858896144 0.0 12 0.0 0.0 0.0 11.396040520051098 0.0 13 0.0 0.0 0.0 11.91261446257805 0.0 14 0.0 0.0 0.0 12.113483602153748 0.0 15 0.0 0.0 0.0 12.49179212282566 0.0 16 0.0 0.0 0.0 13.312430606129345 0.0 17 0.0 0.0 0.0 14.265738231396472 0.0 18 0.0 0.0 0.0 15.410140160695311 0.0 19 0.0 0.0 0.0 16.034386528336576 0.0 20 0.0 0.0 0.0 16.64579876075978 0.0 21 7.461706522128437E-5 0.0 0.0 17.376150595145713 0.0 22 2.238511956638531E-4 0.0 0.0 18.119336564749705 0.0 23 2.238511956638531E-4 0.0 0.0 18.845435226418022 0.0 24 5.223194565489906E-4 0.0 0.0 19.433492317426964 0.0 25 8.954047826554124E-4 0.0 0.0 19.97476450854216 0.0 26 8.954047826554124E-4 0.0 0.0 20.455522259762898 0.0 27 8.954047826554124E-4 0.0 0.0 20.915984169243444 0.0 28 8.954047826554124E-4 0.0 0.0 21.393160301333555 0.0 29 8.954047826554124E-4 0.0 0.0 21.882722866250404 0.0 30 8.954047826554124E-4 0.0 0.0 22.444514750301455 0.0 31 8.954047826554124E-4 0.0 0.0 22.95743245663256 0.0 32 9.700218478766968E-4 0.0 0.0 23.456172920571625 0.0 33 9.700218478766968E-4 0.0 0.0 23.92238034407421 0.0 34 9.700218478766968E-4 0.0 0.0 24.420001552034957 0.0 35 0.0010446389130979812 0.0 0.0 24.9442610522797 0.0 36 0.0010446389130979812 0.0 0.0 25.44106147252301 0.0 37 0.0010446389130979812 0.0 0.0 25.91719296570003 0.0 38 0.0011192559783192654 0.0 0.0 26.42914065018326 0.0 39 0.0011192559783192654 0.0 0.0 26.92422487792648 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGA 20 7.033706E-4 45.0 15 CCGTACG 20 7.033706E-4 45.0 1 ACGCTAG 40 6.8157533E-9 45.0 1 ATCGCGA 20 7.033706E-4 45.0 25 TCGCGAT 20 7.033706E-4 45.0 26 ACGTTGA 30 2.1657725E-6 44.999996 33 GCTACGA 255 0.0 40.588234 10 CCAACGG 45 1.9286745E-8 40.0 2 AAGCTAC 260 0.0 39.80769 8 CGAGACA 40 3.4587902E-7 39.375 22 CGAATAT 265 0.0 39.056602 14 AGTACGG 185 0.0 38.91892 2 ACACGCA 35 6.2490653E-6 38.571426 29 TTTGTCG 35 6.2490653E-6 38.571426 1 TACGAAT 270 0.0 38.333336 12 CGAAAGG 195 0.0 38.07692 2 AATATAC 300 0.0 37.5 16 ACTATAC 30 1.1400232E-4 37.499996 26 ATTAGCG 60 1.5643309E-10 37.499996 1 CGACGTT 30 1.1400232E-4 37.499996 27 >>END_MODULE