SRR3552382_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552382_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	694725
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	3728	0.5366152074561877	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	3270	0.4706898413041131	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	2645	0.38072618662060526	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2065	0.29723991507431	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1975	0.2842851487998848	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCC	1604	0.23088272337975457	No Hit
ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1254	0.18050307675699018	No Hit
AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	836	0.12033538450466011	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	811	0.1167368383173198	No Hit
GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	765	0.11011551333261363	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	699	0.10061535139803518	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	698	0.10047140955054157	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACAACC	25	3.889206E-5	45.000004	9
CGCGCCA	25	3.889206E-5	45.000004	38
ACTTACG	25	3.889206E-5	45.000004	1
TCTAGAC	25	3.889206E-5	45.000004	26
ATGAACG	25	3.889206E-5	45.000004	1
CGTAAGA	25	3.889206E-5	45.000004	31
TCGACAG	25	3.889206E-5	45.000004	1
GCGTAAG	35	1.2109922E-7	45.000004	1
TCGCCCC	20	7.0313585E-4	45.0	27
CGGCATA	20	7.0313585E-4	45.0	3
CCGGACC	20	7.0313585E-4	45.0	29
CACGCGA	20	7.0313585E-4	45.0	20
ATTCGAT	20	7.0313585E-4	45.0	14
TCGATCC	20	7.0313585E-4	45.0	12
CGTTCAT	20	7.0313585E-4	45.0	17
AGACGAA	20	7.0313585E-4	45.0	19
ATGCGTT	20	7.0313585E-4	45.0	35
CGTAAAG	20	7.0313585E-4	45.0	13
ACCCGTA	20	7.0313585E-4	45.0	14
GCTCGAT	20	7.0313585E-4	45.0	10