##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 694725 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.091123825974307 31.0 31.0 34.0 28.0 34.0 2 31.284822051891037 31.0 31.0 34.0 28.0 34.0 3 31.33375220410954 31.0 31.0 34.0 28.0 34.0 4 35.100052538774335 37.0 35.0 37.0 32.0 37.0 5 34.9345525207816 35.0 35.0 37.0 32.0 37.0 6 35.031719025513695 36.0 35.0 37.0 32.0 37.0 7 35.46743819496923 37.0 35.0 37.0 33.0 37.0 8 35.47571629061859 37.0 35.0 37.0 33.0 37.0 9 36.90299327071863 39.0 37.0 39.0 33.0 39.0 10 36.46266508330634 38.0 35.0 39.0 32.0 39.0 11 36.20712800028788 38.0 35.0 39.0 32.0 39.0 12 36.17711468566699 38.0 35.0 39.0 32.0 39.0 13 35.84456439598402 38.0 35.0 39.0 30.0 39.0 14 36.93377811364209 39.0 35.0 40.0 31.0 41.0 15 37.06613264241246 39.0 36.0 40.0 32.0 41.0 16 37.06781964086509 39.0 35.0 40.0 32.0 41.0 17 37.10369858577135 39.0 35.0 40.0 32.0 41.0 18 37.02266652272482 39.0 36.0 40.0 32.0 41.0 19 36.92544819892763 39.0 35.0 40.0 31.0 41.0 20 36.5515635683184 38.0 35.0 40.0 30.0 41.0 21 36.58267947749109 38.0 35.0 40.0 30.0 41.0 22 36.67717154269675 38.0 35.0 40.0 31.0 41.0 23 36.50351290078808 38.0 35.0 40.0 30.0 41.0 24 36.524526971103676 38.0 35.0 40.0 30.0 41.0 25 36.53892979236389 38.0 35.0 40.0 31.0 41.0 26 36.479406959588324 38.0 35.0 40.0 30.0 41.0 27 36.26271978120839 38.0 35.0 40.0 30.0 41.0 28 36.24828385332326 38.0 35.0 40.0 30.0 41.0 29 36.267464104501784 38.0 35.0 40.0 30.0 41.0 30 36.07993378675015 38.0 35.0 40.0 30.0 41.0 31 35.863586311130305 38.0 34.0 40.0 29.0 41.0 32 35.52177480297959 38.0 34.0 40.0 27.0 41.0 33 35.372109827629636 38.0 34.0 40.0 27.0 41.0 34 35.274203461801434 38.0 34.0 40.0 26.0 41.0 35 35.07363057324841 38.0 34.0 40.0 25.0 41.0 36 35.10309978768578 38.0 34.0 40.0 25.0 41.0 37 35.10398934830329 38.0 34.0 40.0 26.0 41.0 38 35.023269639065816 38.0 34.0 40.0 25.0 41.0 39 34.967650509194286 38.0 34.0 40.0 25.0 41.0 40 34.79582712584116 38.0 33.0 40.0 24.0 41.0 41 34.705414372593474 38.0 33.0 40.0 24.0 41.0 42 34.74670697038397 38.0 33.0 40.0 24.0 41.0 43 34.67150887041635 37.0 33.0 40.0 24.0 41.0 44 34.55829141027025 37.0 33.0 40.0 24.0 41.0 45 34.447613084313936 37.0 33.0 40.0 23.0 41.0 46 34.27800784483069 37.0 33.0 40.0 23.0 41.0 47 34.16606283061643 37.0 33.0 40.0 23.0 41.0 48 34.15856202094354 37.0 33.0 40.0 23.0 41.0 49 34.11602432617222 37.0 33.0 40.0 23.0 41.0 50 33.96703875634244 36.0 33.0 40.0 23.0 41.0 51 32.7379984886106 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 14.0 9 43.0 10 62.0 11 44.0 12 30.0 13 14.0 14 35.0 15 57.0 16 113.0 17 320.0 18 671.0 19 1042.0 20 1640.0 21 2496.0 22 3539.0 23 4852.0 24 6661.0 25 8127.0 26 9573.0 27 10979.0 28 12855.0 29 15638.0 30 19132.0 31 23953.0 32 29703.0 33 38883.0 34 55867.0 35 63509.0 36 68517.0 37 88642.0 38 120592.0 39 107104.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79668214041527 20.852855446399655 25.309870812191875 12.0405916009932 2 31.848861060131707 25.468494728129837 24.64860196480622 18.034042246932238 3 30.394616574903736 25.881032063046526 27.0804994782108 16.643851883838927 4 28.30400518190651 27.159091726942314 26.062110907193492 18.474792183957682 5 23.65223649645543 30.621324984706177 25.433804742883876 20.292633775954513 6 24.22800388642988 35.69325992299111 25.278779373133254 14.799956817445754 7 76.54208499766094 7.921983518658463 10.105149519594084 5.430781964086509 8 75.66188060023751 7.068984130411314 10.53092950448019 6.738205764870991 9 69.15211054733888 9.702256288459463 13.556443196948434 7.58918996725323 10 38.20893159163698 26.6771744215337 19.293677354348844 15.820216632480477 11 27.900248299686925 27.740328907121526 24.927273381553853 19.4321494116377 12 25.799273093670156 23.759041347295693 31.413436971463526 19.02824858757062 13 23.42653567958545 26.755766670265213 31.67886573824175 18.138831911907587 14 18.847889452661125 30.768289610997158 28.883515059915794 21.500305876425923 15 17.520169851380043 27.03530173809781 35.38148188131995 20.063046529202204 16 18.55842239735147 27.61034941883479 31.978264781028464 21.852963402785274 17 19.060635503256684 26.993414660477168 28.199935226168627 25.74601461009752 18 20.206700493000827 26.833927093454246 31.257404008780455 21.701968404764475 19 21.18147468422757 28.124509698081972 29.159739465256035 21.534276152434416 20 23.01183921695635 28.337255748677535 28.580661412789233 20.070243621576882 21 21.092662564324012 30.404260678685812 29.18780812551729 19.315268631472886 22 19.869588686170786 27.837633596027207 26.338047428838752 25.95473028896326 23 19.583864118895967 29.12202670121271 27.838353305264675 23.455755874626654 24 21.132966281622227 26.878117240634786 28.276656230882725 23.712260246860268 25 18.66321206232682 28.803915218251824 27.085105617330598 25.447767102090758 26 19.112886393896865 28.726618446147757 28.011659289646985 24.148835870308396 27 22.162870200439023 28.080175609053942 26.88099607758466 22.87595811292238 28 18.008420598078377 27.804958796646158 28.753679513476555 25.43294109179891 29 19.592644571593077 26.569361977760984 27.69282809744863 26.145165353197307 30 22.57425600057577 28.267300010795637 25.46460829824751 23.693835690381086 31 21.35118212242254 30.446291698153942 22.780524668034115 25.422001511389396 32 20.550865450358057 29.656050955414017 25.11209471373565 24.68098888049228 33 21.951851452013386 29.300226708409806 24.551585159595525 24.196336679981286 34 18.465004138328116 28.226420526107454 27.01946813487351 26.28910720069092 35 19.992658965777828 27.378315160675086 26.24175033286552 26.387275540681564 36 22.02123142250531 29.089064018136675 26.308395408255063 22.581309151102953 37 21.462017344992624 28.11990355896218 27.55968188851704 22.858397207528157 38 19.400050379646622 30.165317211846414 27.40163373996905 23.03299866853791 39 21.135701176724602 27.266616287020046 29.25992299111159 22.33775954514376 40 21.38155385224369 29.082730576846956 28.217352189715356 21.318363381193997 41 19.374428730792758 28.53661520745619 25.993738529634026 26.095217532117026 42 21.747022203029974 24.562380798157545 28.82565043722336 24.864946561589118 43 23.408399006801254 21.853395228327756 30.263053726294576 24.475152038576415 44 20.2929216596495 24.54597142754327 27.94659757457987 27.214509338227355 45 21.631436899492602 23.563856202094353 27.94832487674979 26.85638202166325 46 22.2715462952967 26.914534528050666 27.62704667314405 23.18687250350858 47 18.0934902299471 27.070135665191263 31.319011119507717 23.51736298535392 48 19.19147864262838 25.10935981863327 30.85048040591601 24.84868113282234 49 21.40890280326748 22.712871999712117 32.4529849940624 23.425240202958005 50 19.74939724351362 22.79866134081831 31.0445140163374 26.40742739933067 51 18.87638993846486 22.60621109071935 27.343625175429125 31.173773795386662 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 583.0 1 829.5 2 1076.0 3 2491.5 4 3907.0 5 2969.0 6 2031.0 7 2136.5 8 2242.0 9 2335.0 10 2428.0 11 2621.0 12 2814.0 13 3015.5 14 3217.0 15 3254.0 16 3291.0 17 3305.0 18 3319.0 19 3264.5 20 3210.0 21 3244.5 22 3279.0 23 3722.5 24 4166.0 25 4970.5 26 6333.0 27 6891.0 28 8018.0 29 9145.0 30 10300.0 31 11455.0 32 12370.5 33 13286.0 34 14030.0 35 14774.0 36 16074.0 37 17374.0 38 19226.5 39 21079.0 40 24549.0 41 28019.0 42 35291.5 43 42564.0 44 52472.0 45 62380.0 46 74467.5 47 86555.0 48 83126.5 49 79698.0 50 68009.0 51 56320.0 52 48487.0 53 40654.0 54 36073.0 55 31492.0 56 29059.0 57 26626.0 58 24889.5 59 23153.0 60 22216.5 61 21280.0 62 19868.5 63 18457.0 64 15637.0 65 12817.0 66 10998.0 67 9179.0 68 7735.0 69 6291.0 70 5557.5 71 4824.0 72 3906.0 73 2988.0 74 2809.5 75 2114.5 76 1598.0 77 1224.0 78 850.0 79 698.5 80 547.0 81 365.5 82 184.0 83 168.5 84 153.0 85 104.0 86 55.0 87 40.5 88 26.0 89 17.5 90 9.0 91 11.0 92 13.0 93 15.5 94 18.0 95 10.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 694725.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.849264654254824 #Duplication Level Percentage of deduplicated Percentage of total 1 73.22738279711051 24.786930602378206 2 11.15029625693955 7.548586579489876 3 4.443842105635361 4.5126236254611705 4 2.2324500585824447 3.0226717144145536 5 1.385768229922109 2.3453617782045857 6 0.8813621500538816 1.7900076404050134 7 0.6563569937637934 1.555204111270721 8 0.49385613700660524 1.3373333666131608 9 0.40016300161952084 1.2190701011994147 >10 4.672370907022872 35.772641974183706 >50 0.3797685378250489 8.237294581786585 >100 0.06651313370977477 4.004478473478323 >500 0.0068658718668154605 1.4651664682061678 >1k 0.0030038189417317634 2.402628982908518 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 3728 0.5366152074561877 No Hit GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 3270 0.4706898413041131 No Hit CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 2645 0.38072618662060526 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2065 0.29723991507431 No Hit TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1975 0.2842851487998848 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCC 1604 0.23088272337975457 No Hit ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1254 0.18050307675699018 No Hit AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG 836 0.12033538450466011 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 811 0.1167368383173198 No Hit GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG 765 0.11011551333261363 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 699 0.10061535139803518 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 698 0.10047140955054157 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6152074561877001 0.0 2 0.0 0.0 0.0 2.101119147864263 0.0 3 0.0 0.0 0.0 2.978588650185325 0.0 4 0.0 0.0 0.0 4.019863974954118 0.0 5 0.0 0.0 0.0 6.222893950843859 0.0 6 0.0 0.0 0.0 7.440066213249847 0.0 7 0.0 0.0 0.0 8.701428622836374 0.0 8 0.0 0.0 0.0 10.976861348015401 0.0 9 0.0 0.0 0.0 11.846701932419302 0.0 10 0.0 0.0 0.0 13.756090539422074 0.0 11 0.0 0.0 0.0 16.74677030479686 0.0 12 0.0 0.0 0.0 19.012414984346325 0.0 13 0.0 0.0 0.0 19.871172046493218 0.0 14 0.0 0.0 0.0 20.177912123502104 0.0 15 0.0 0.0 0.0 20.746194537406886 0.0 16 0.0 0.0 0.0 21.980064054122135 0.0 17 0.0 0.0 0.0 23.40148979812156 0.0 18 0.0 0.0 0.0 25.2754687106409 0.0 19 0.0 0.0 0.0 26.164597502608945 0.0 20 0.0 0.0 0.0 27.04652920220231 0.0 21 4.3182554248083775E-4 0.0 0.0 28.0473568678254 0.0 22 8.636510849616755E-4 0.0 0.0 28.99175932923099 0.0 23 0.0011515347799489007 0.0 0.0 29.91385080427507 0.0 24 0.004174313577314765 0.0 0.0 30.600165533124617 0.0 25 0.004894022814782828 0.0 0.0 31.218107884414696 0.0 26 0.00503796466227644 0.0 0.0 31.795314692864082 0.0 27 0.00503796466227644 0.0 0.0 32.34186188779733 0.0 28 0.00503796466227644 0.0 0.0 32.92770520709633 0.0 29 0.00503796466227644 0.0 0.0 33.516571305192706 0.0 30 0.00503796466227644 0.0 0.0 34.171362769441146 0.0 31 0.005181906509770053 0.0 0.0 34.77908524955918 0.0 32 0.005181906509770053 0.0 0.0 35.402065565511535 0.0 33 0.005613732052250891 0.0 0.0 35.978264781028464 0.0 34 0.005901615747238116 0.0 0.0 36.54208499766094 0.0 35 0.006045557594731728 0.0 0.0 37.14160279247184 0.0 36 0.006045557594731728 0.0 0.0 37.701104753679516 0.0 37 0.006333441289718953 0.0 0.0 38.29155421209831 0.0 38 0.0067652668321997915 0.0 0.0 38.86156392817302 0.0 39 0.0067652668321997915 0.0 0.0 39.481953290870486 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACAACC 25 3.889206E-5 45.000004 9 CGCGCCA 25 3.889206E-5 45.000004 38 ACTTACG 25 3.889206E-5 45.000004 1 TCTAGAC 25 3.889206E-5 45.000004 26 ATGAACG 25 3.889206E-5 45.000004 1 CGTAAGA 25 3.889206E-5 45.000004 31 TCGACAG 25 3.889206E-5 45.000004 1 GCGTAAG 35 1.2109922E-7 45.000004 1 TCGCCCC 20 7.0313585E-4 45.0 27 CGGCATA 20 7.0313585E-4 45.0 3 CCGGACC 20 7.0313585E-4 45.0 29 CACGCGA 20 7.0313585E-4 45.0 20 ATTCGAT 20 7.0313585E-4 45.0 14 TCGATCC 20 7.0313585E-4 45.0 12 CGTTCAT 20 7.0313585E-4 45.0 17 AGACGAA 20 7.0313585E-4 45.0 19 ATGCGTT 20 7.0313585E-4 45.0 35 CGTAAAG 20 7.0313585E-4 45.0 13 ACCCGTA 20 7.0313585E-4 45.0 14 GCTCGAT 20 7.0313585E-4 45.0 10 >>END_MODULE