SRR3552375_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552375_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	867874
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	3514	0.40489748511880763	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	3214	0.37033025531355934	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	2737	0.31536835992321466	TruSeq Adapter, Index 14 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1359	0.15658955101777447	TruSeq Adapter, Index 14 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	936	0.10784975699237448	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC	917	0.10566049910470876	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	872	0.10047541463392151	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	55	1.8189894E-12	45.0	1
ATTACAC	25	3.890013E-5	45.0	16
ATTCGCG	20	7.032331E-4	45.0	1
TAACGCG	40	6.8121153E-9	45.0	1
AAAGTCG	35	1.2114651E-7	45.0	1
CTACGCA	75	0.0	45.0	15
CCGACTA	20	7.032331E-4	45.0	44
TCATCGC	20	7.032331E-4	45.0	36
TAGGCCC	20	7.032331E-4	45.0	40
TCGACCC	20	7.032331E-4	45.0	25
TATCGGT	20	7.032331E-4	45.0	30
TGCGTAG	45	3.8380676E-10	45.0	1
TACGTAG	95	0.0	42.63158	1
TACGGTT	110	0.0	40.909092	33
CGTATGG	105	0.0	40.714287	2
GTTTACG	45	1.9274012E-8	40.0	1
ACGCATT	85	0.0	39.705883	17
CGAATAT	125	0.0	39.600002	14
ATCACGC	40	3.4569166E-7	39.375	45
TAGTGCG	80	0.0	39.375	1