SRR3552374_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552374_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	965409
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	3738	0.3871934071466083	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2723	0.28205662056185515	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	2181	0.22591461235600663	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1661	0.17205143105150253	TruSeq Adapter, Index 15 (95% over 22bp)
ACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1368	0.14170160004723387	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1199	0.12419606612327004	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1017	0.1053439526666936	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	20	7.032724E-4	45.000004	15
GTCGACA	20	7.032724E-4	45.000004	23
GTTAGAT	20	7.032724E-4	45.000004	18
ATCACGC	20	7.032724E-4	45.000004	25
TCAATCG	20	7.032724E-4	45.000004	43
GAGCGTA	20	7.032724E-4	45.000004	9
ACGTCTA	20	7.032724E-4	45.000004	11
CGTCCAT	20	7.032724E-4	45.000004	27
TCGAATC	20	7.032724E-4	45.000004	29
TGCGTGA	20	7.032724E-4	45.000004	40
GATCGAG	25	3.890341E-5	45.0	1
TCGTCCA	25	3.890341E-5	45.0	26
TCGTAAG	25	3.890341E-5	45.0	1
TTACGAG	45	3.8380676E-10	45.0	1
ACGTAAC	25	3.890341E-5	45.0	11
TATCGAT	25	3.890341E-5	45.0	34
TAATGCG	45	3.8380676E-10	45.0	1
ATTAGTC	60	3.6379788E-12	41.249996	31
AATACGG	60	3.6379788E-12	41.249996	2
ATTAGCG	55	6.002665E-11	40.909092	1