SRR3552370_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552370_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1400607
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	3927	0.2803784359209971	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	3360	0.23989598795379433	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	2767	0.1975572019845681	No Hit
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	2399	0.17128287949439064	Illumina Single End Adapter 2 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1669	0.11916262020681033	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1575	0.11245124435334108	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1563	0.11159447296779182	No Hit
TCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	1511	0.10788179696374502	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAAAC	30	2.1658434E-6	45.000004	10
CTATACG	20	7.033815E-4	45.0	26
TATATCG	20	7.033815E-4	45.0	1
TACGTAG	20	7.033815E-4	45.0	1
CGCTTAA	20	7.033815E-4	45.0	44
TTAGCCG	55	6.184564E-11	40.909092	1
TAGAACG	55	6.184564E-11	40.909092	1
TACGGGT	160	0.0	39.375	4
CCCTCGT	535	0.0	38.69159	14
CGTGTAC	535	0.0	38.69159	18
CGAAACA	35	6.2492672E-6	38.57143	11
CTATCGG	35	6.2492672E-6	38.57143	2
CGATTAC	35	6.2492672E-6	38.57143	10
ACCGTAG	35	6.2492672E-6	38.57143	1
TGTAACG	70	0.0	38.57143	1
TCTATCG	35	6.2492672E-6	38.57143	1
AGGGTAC	510	0.0	38.382355	6
ATTACGG	60	1.5643309E-10	37.500004	2
CCAATCG	30	1.14004906E-4	37.500004	1
ACTTCGA	30	1.14004906E-4	37.500004	37