SRR3552362_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552362_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410579
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10613	2.5848862216528365	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGC	6868	1.6727596881477136	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCG	6457	1.5726571500247213	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC	6412	1.5616970181134446	No Hit
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	2279	0.5550697916844262	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATCTGGT	1643	0.4001665940050514	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCT	1300	0.31662603299243264	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTA	1275	0.3105370708195012	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCT	1175	0.28618122212777564	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTC	899	0.218959079738613	No Hit
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	606	0.14759644307185707	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	485	0.1181258661548691	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGACGG	60	0.0	45.000004	2
TATGGGT	20	7.027983E-4	45.0	4
CTGAACG	20	7.027983E-4	45.0	1
CGAATGC	20	7.027983E-4	45.0	45
TTAGTCA	55	1.8189894E-12	45.0	32
TATAGAG	20	7.027983E-4	45.0	1
CGGTCGA	20	7.027983E-4	45.0	41
CGTCATA	20	7.027983E-4	45.0	38
GTAACGG	20	7.027983E-4	45.0	2
ACGAACG	20	7.027983E-4	45.0	1
CGTTTTT	5465	0.0	43.84721	1
ATAGGGC	80	0.0	42.1875	4
GCGTTAG	60	3.6379788E-12	41.250004	1
CCGATGA	475	0.0	41.21053	18
TACGGCT	755	0.0	41.125828	7
ACGGCTG	765	0.0	40.588234	8
TACGGGA	100	0.0	40.500004	4
GATGAAT	435	0.0	40.344826	20
CGATGAA	430	0.0	40.2907	19
AACGGGC	95	0.0	40.263157	4