##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552362_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 410579 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.164401978669147 28.0 23.0 31.0 16.0 33.0 2 27.083930254591685 30.0 25.0 31.0 16.0 33.0 3 27.211033686574325 30.0 25.0 33.0 16.0 34.0 4 30.63609195794232 33.0 28.0 35.0 19.0 37.0 5 32.451554999159725 33.0 32.0 35.0 28.0 37.0 6 31.475323871897977 35.0 31.0 35.0 17.0 37.0 7 33.21360079302643 35.0 32.0 35.0 28.0 37.0 8 33.53030232914981 35.0 33.0 37.0 28.0 37.0 9 35.08466823680705 37.0 34.0 39.0 30.0 39.0 10 35.16485499745481 37.0 34.0 39.0 30.0 39.0 11 35.48709748915556 37.0 34.0 39.0 30.0 39.0 12 35.20303035469423 37.0 34.0 39.0 30.0 39.0 13 35.346846770049126 37.0 34.0 39.0 30.0 39.0 14 35.89550610235789 38.0 34.0 40.0 29.0 41.0 15 36.15501767016823 38.0 34.0 40.0 30.0 41.0 16 35.80826345234413 38.0 34.0 40.0 28.0 41.0 17 35.730867871956434 37.0 34.0 40.0 30.0 41.0 18 35.452288110205345 37.0 34.0 39.0 27.0 40.0 19 34.77124986908731 37.0 33.0 39.0 27.0 40.0 20 35.01021484294131 36.0 34.0 39.0 29.0 40.0 21 35.173055611709316 37.0 34.0 39.0 29.0 40.0 22 35.718855567381674 37.0 34.0 39.0 30.0 40.0 23 36.184931523531404 38.0 35.0 40.0 31.0 41.0 24 36.16889806833764 38.0 35.0 40.0 31.0 41.0 25 34.44991097937303 36.0 33.0 39.0 25.0 40.0 26 34.951380854841574 36.0 33.0 39.0 27.0 40.0 27 35.56635629196817 37.0 34.0 39.0 30.0 41.0 28 35.606760209362875 37.0 34.0 40.0 30.0 41.0 29 35.74819462271572 38.0 35.0 40.0 30.0 41.0 30 35.01397051480957 37.0 34.0 40.0 27.0 41.0 31 34.99283207373003 37.0 34.0 40.0 27.0 41.0 32 34.74863302799218 37.0 34.0 40.0 25.0 41.0 33 34.64083647726747 38.0 34.0 40.0 23.0 41.0 34 34.444803557902375 38.0 34.0 40.0 22.0 41.0 35 34.272386069428784 38.0 34.0 40.0 20.0 41.0 36 33.99330701277951 38.0 33.0 40.0 18.0 41.0 37 34.08530636004277 38.0 34.0 40.0 18.0 41.0 38 33.72233845374459 37.0 33.0 40.0 18.0 41.0 39 33.68267251856525 37.0 33.0 40.0 18.0 41.0 40 33.49836206917548 37.0 33.0 40.0 18.0 41.0 41 33.25417520136198 36.0 33.0 40.0 18.0 41.0 42 33.489959301376835 37.0 33.0 40.0 18.0 41.0 43 33.56575470250549 37.0 33.0 40.0 17.0 41.0 44 33.68215373898811 37.0 33.0 40.0 18.0 41.0 45 33.67962316630904 37.0 33.0 40.0 18.0 41.0 46 33.54120400702423 36.0 33.0 40.0 18.0 41.0 47 33.450478470647546 36.0 33.0 40.0 18.0 41.0 48 33.50392494501667 36.0 33.0 40.0 18.0 41.0 49 33.57118849234861 36.0 33.0 40.0 18.0 41.0 50 33.44790892861057 36.0 33.0 40.0 18.0 41.0 51 32.390392591925064 35.0 31.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 14.0 9 27.0 10 36.0 11 35.0 12 37.0 13 29.0 14 61.0 15 71.0 16 135.0 17 234.0 18 484.0 19 754.0 20 1337.0 21 2100.0 22 3015.0 23 4117.0 24 5717.0 25 8081.0 26 10523.0 27 11624.0 28 11448.0 29 11939.0 30 13697.0 31 17723.0 32 23628.0 33 31170.0 34 37510.0 35 47513.0 36 57300.0 37 63519.0 38 40968.0 39 5730.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.20414828814918 15.767976443023146 18.856785174107785 26.171090094719894 2 37.7408488987503 24.98593449738053 21.22953195365569 16.04368465021348 3 27.042055243936 24.487613833147822 33.563333731145526 14.906997191770646 4 25.01686642521902 20.251157511709074 38.79156021131134 15.940415851760562 5 26.778281402604616 22.946619286422347 32.36234683215654 17.9127524788165 6 21.57489788810436 32.2276589888913 32.82900489309 13.36843822991434 7 64.71422064937565 4.9038065755920295 26.226864988223948 4.155107786808386 8 64.795569184006 9.581834433811762 20.488383477966483 5.1342129042157545 9 60.144332759347165 5.323944965524296 21.376641279753713 13.155080995374824 10 39.21169860124361 18.05036302392475 28.429364385416694 14.308573989414949 11 31.009622995818102 19.0489528202855 32.22571052099596 17.71571366290044 12 24.876820295241597 17.398356954447255 36.6638332696022 21.06098948070895 13 23.641491649597278 18.468552945961676 40.24219455939052 17.647760845050524 14 19.5796667632782 23.70773955803877 36.60537923274205 20.107214445940976 15 18.144133041387896 19.19265232756668 43.14248902160121 19.520725609444224 16 20.882704668285516 19.912124097920252 36.261231090727975 22.943940143066254 17 20.39169075866033 20.937261769354983 38.00705832495086 20.663989147033824 18 21.7561054023708 19.793998231765386 37.19552144654257 21.25437491932125 19 21.042479035703238 22.393010845659422 34.574832127312895 21.989677991324445 20 23.324622058117924 21.356182366852664 38.195085476850984 17.124110098178427 21 22.53792814537519 24.611828661475624 35.15328353374137 17.696959659407813 22 20.597984797079246 19.16245107518894 37.85459071214066 22.38497341559115 23 21.808714035544927 23.162899222804867 35.83622153105736 19.192165210592847 24 22.624634966717732 20.47182150085611 35.240964589031584 21.66257894339457 25 20.26211764362035 23.945452641270013 34.25528339247745 21.537146322632186 26 18.989524549477686 19.56968086531459 38.10959644794303 23.331198137264693 27 21.358374393234918 20.92703231290446 35.02736379600515 22.68722949785547 28 17.321879589555238 23.174833588663816 38.31564692787502 21.187639893905924 29 21.027865526488203 19.82614795203846 37.76520474744203 21.380781774031306 30 20.044132797829405 21.97335957270099 36.58930437260551 21.393203256864087 31 22.769065149459667 21.587806487910974 33.67780621999664 21.965322142632722 32 24.30324005855146 22.212534006853733 34.622569590748675 18.86165634384613 33 22.123635159128938 21.20590678042472 31.424890216012024 25.245567844434326 34 21.98139700276926 22.30338132247387 35.96433329517584 19.75088837958103 35 22.910329071871676 22.329685639060937 31.264872290107387 23.495112998960003 36 23.02260953434053 26.41927619288858 30.813314855362794 19.7447994174081 37 21.566129782575338 23.87019306881258 33.13418367719733 21.42949347141476 38 22.18281987144983 26.355707427803175 28.21649426785101 23.244978432895984 39 23.045260473623834 22.82191734112071 32.9405546800981 21.19226750515735 40 23.277615270142896 21.34668358586289 31.44948962319066 23.926211520803548 41 21.945350346705506 24.130557091327127 31.18985627613687 22.734236285830498 42 22.967078199323396 22.785870685056956 32.23691421139415 22.010136904225497 43 24.210200716549068 22.115841287547585 29.856130001777974 23.81782799412537 44 21.676461777148855 22.188665275135843 31.961206004203817 24.173666943511478 45 21.48526836491881 21.6050991404821 31.21299433239401 25.696638162205083 46 24.715584576902376 23.273474775865303 31.052489289515538 20.958451357716783 47 19.564322578602415 22.22227634633043 36.55398839200251 21.659412683064648 48 21.47357755754678 23.08837032580819 32.12390307346455 23.314149043180485 49 21.567347575009926 20.551952243051886 35.621402945596344 22.259297236341848 50 21.781435485010192 20.57021912957068 33.85828305880232 23.790062326616802 51 20.235813327033288 20.608701370503606 32.70893055903979 26.446554743423313 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 111.0 1 424.0 2 737.0 3 9579.0 4 18421.0 5 12154.5 6 5888.0 7 5529.5 8 5171.0 9 5000.5 10 4830.0 11 4620.0 12 4410.0 13 4159.5 14 3909.0 15 3625.5 16 3342.0 17 3134.5 18 2927.0 19 2686.0 20 2445.0 21 2437.0 22 2429.0 23 2263.5 24 2098.0 25 2162.0 26 2389.0 27 2552.0 28 3022.0 29 3492.0 30 3913.0 31 4334.0 32 4980.0 33 5626.0 34 6494.0 35 7362.0 36 7979.5 37 8597.0 38 8797.5 39 8998.0 40 10070.5 41 11143.0 42 12526.0 43 13909.0 44 15980.0 45 18051.0 46 32791.0 47 47531.0 48 38548.0 49 29565.0 50 29842.5 51 30120.0 52 26906.0 53 23692.0 54 22715.0 55 21738.0 56 20942.5 57 20147.0 58 19711.5 59 19276.0 60 18669.0 61 18062.0 62 17332.0 63 16602.0 64 14553.5 65 12505.0 66 10748.0 67 8991.0 68 7726.5 69 6462.0 70 5384.0 71 4306.0 72 3806.5 73 3307.0 74 2783.5 75 1874.0 76 1488.0 77 1130.5 78 773.0 79 601.5 80 430.0 81 312.5 82 195.0 83 131.5 84 68.0 85 47.5 86 27.0 87 23.5 88 20.0 89 13.0 90 6.0 91 3.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 410579.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.281604107542464 #Duplication Level Percentage of deduplicated Percentage of total 1 75.7087794088654 29.739623002043125 2 7.651697610868044 6.011419126014939 3 3.2997048257378765 3.888530959091479 4 2.1526432587563207 3.3823712110094344 5 1.714147737986986 3.3667236412722104 6 1.4292356257847325 3.368560081708294 7 1.2123760843327733 3.333685416194876 8 1.0528193502922796 3.3085146331953115 9 0.9296992859476237 3.2868071360693523 >10 4.7671359288706885 27.56405677510741 >50 0.0530509543310759 1.3981921549943908 >100 0.021844510606913607 1.6607669047750313 >500 0.001248257748966492 0.3689775895610307 >1k 0.00312064437241623 1.8809276193436728 >5k 0.0018723866234497378 4.838877531671803 >10k+ 6.24128874483246E-4 2.6019662179476537 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10613 2.5848862216528365 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGC 6868 1.6727596881477136 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCG 6457 1.5726571500247213 No Hit GAATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC 6412 1.5616970181134446 No Hit GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC 2279 0.5550697916844262 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATCTGGT 1643 0.4001665940050514 No Hit GAACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCT 1300 0.31662603299243264 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTA 1275 0.3105370708195012 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCT 1175 0.28618122212777564 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTC 899 0.218959079738613 No Hit CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC 606 0.14759644307185707 No Hit CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT 485 0.1181258661548691 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1220228019455452 0.0 2 0.0 0.0 0.0 0.9467118386473736 0.0 3 0.0 0.0 0.0 1.1639660089775659 0.0 4 0.0 0.0 0.0 1.7231762949395852 0.0 5 0.0 0.0 0.0 3.91593335265564 0.0 6 0.0 0.0 0.0 4.42448347333887 0.0 7 0.0 0.0 0.0 5.120086511974553 0.0 8 0.0 0.0 0.0 5.888757096685413 0.0 9 0.0 0.0 0.0 6.176156111247774 0.0 10 0.0 0.0 0.0 8.268079955380085 0.0 11 0.0 0.0 0.0 8.973668891979376 0.0 12 0.0 0.0 0.0 11.318406445531798 0.0 13 0.0 0.0 0.0 11.677168096760916 0.0 14 0.0 0.0 0.0 11.847902596089913 0.0 15 0.0 0.0 0.0 12.36375947138066 0.0 16 0.0 0.0 0.0 12.791691732894279 0.0 17 0.0 0.0 0.0 13.266387223896011 0.0 18 0.0 0.0 0.0 13.757157575034281 0.0 19 0.0 0.0 0.0 14.477603579335524 0.0 20 0.0 0.0 0.0 14.84099284181607 0.0 21 0.0 0.0 0.0 15.180269814091806 0.0 22 0.0 0.0 0.0 15.585064019348286 0.0 23 0.0 0.0 0.0 15.928237927414699 0.0 24 0.0 0.0 0.0 16.221482345663077 0.0 25 0.0 0.0 0.0 16.473808938109354 0.0 26 0.0 0.0 0.0 16.725891972068712 0.0 27 0.0 0.0 0.0 17.00744558294506 0.0 28 0.0 0.0 0.0 17.2380954700557 0.0 29 0.0 0.0 0.0 17.47702634572153 0.0 30 0.0 0.0 0.0 17.740313070079083 0.0 31 0.0 0.0 0.0 17.972667866598144 0.0 32 0.0 0.0 0.0 18.243261345563216 0.0 33 0.0 0.0 0.0 18.508983654789944 0.0 34 2.4355848691725587E-4 0.0 0.0 18.781282043163436 0.0 35 2.4355848691725587E-4 0.0 0.0 19.07744916325482 0.0 36 2.4355848691725587E-4 0.0 0.0 19.34804264221989 0.0 37 4.8711697383451173E-4 0.0 0.0 19.60621463835218 0.0 38 4.8711697383451173E-4 0.0 0.0 19.9113934224595 0.0 39 4.8711697383451173E-4 0.0 0.0 20.23264706670336 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGACGG 60 0.0 45.000004 2 TATGGGT 20 7.027983E-4 45.0 4 CTGAACG 20 7.027983E-4 45.0 1 CGAATGC 20 7.027983E-4 45.0 45 TTAGTCA 55 1.8189894E-12 45.0 32 TATAGAG 20 7.027983E-4 45.0 1 CGGTCGA 20 7.027983E-4 45.0 41 CGTCATA 20 7.027983E-4 45.0 38 GTAACGG 20 7.027983E-4 45.0 2 ACGAACG 20 7.027983E-4 45.0 1 CGTTTTT 5465 0.0 43.84721 1 ATAGGGC 80 0.0 42.1875 4 GCGTTAG 60 3.6379788E-12 41.250004 1 CCGATGA 475 0.0 41.21053 18 TACGGCT 755 0.0 41.125828 7 ACGGCTG 765 0.0 40.588234 8 TACGGGA 100 0.0 40.500004 4 GATGAAT 435 0.0 40.344826 20 CGATGAA 430 0.0 40.2907 19 AACGGGC 95 0.0 40.263157 4 >>END_MODULE