SRR3552361_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552361_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	768568
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15405	2.0043769711983845	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCG	12946	1.684431306013261	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC	12691	1.6512527193429858	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGC	11497	1.4958988664633448	No Hit
GCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	4092	0.5324187319794735	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCT	2197	0.2858562937827232	No Hit
GAACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCT	2130	0.2771387827752392	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTC	1923	0.2502055771252511	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTA	1226	0.15951744022649914	No Hit
CCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC	992	0.12907120775259964	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGATA	25	3.8895945E-5	45.000004	24
CAATACG	25	3.8895945E-5	45.000004	1
TGCGTCG	30	2.1645592E-6	45.000004	1
CGTATCT	20	7.031826E-4	45.0	22
TACGATC	20	7.031826E-4	45.0	11
CAATGCG	20	7.031826E-4	45.0	1
ATACGAT	20	7.031826E-4	45.0	10
CGTTTTT	8490	0.0	43.67491	1
TACGGCT	1540	0.0	41.63961	7
CGGTCTA	60	3.6379788E-12	41.250004	31
CGAATAT	50	1.0804797E-9	40.500004	14
CACGACC	180	0.0	40.0	27
ACGGCTG	1610	0.0	39.829193	8
TGATACC	1955	0.0	38.785168	4
TATACGG	35	6.2455892E-6	38.571426	2
GATACCT	1980	0.0	38.181816	5
GAATGAT	4620	0.0	38.181816	1
GAATCTG	2025	0.0	38.11111	1
AATGACT	340	0.0	37.72059	2
CGGCTGT	1695	0.0	37.566372	9