Basic Statistics
Measure | Value |
---|---|
Filename | SRR3552359_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 465903 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8863 | 1.9023273084740815 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC | 7375 | 1.5829475234115253 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG | 6276 | 1.3470615128041674 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGC | 5638 | 1.21012313721955 | No Hit |
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC | 2242 | 0.4812160471171038 | No Hit |
GAACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT | 1884 | 0.4043760181840426 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCT | 1148 | 0.2464032212713805 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTC | 1044 | 0.22408097822937392 | No Hit |
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC | 733 | 0.1573288860556811 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTA | 669 | 0.14359212110675398 | No Hit |
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT | 586 | 0.1257772540636141 | Illumina Single End Adapter 1 (95% over 21bp) |
GAATGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTT | 501 | 0.10753311311582024 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGATAC | 30 | 2.162713E-6 | 45.000004 | 9 |
TTCACGG | 35 | 1.2098462E-7 | 45.0 | 2 |
GCGTTAG | 25 | 3.8872233E-5 | 45.0 | 1 |
ATCCGCA | 20 | 7.028964E-4 | 45.0 | 11 |
CATAGCG | 20 | 7.028964E-4 | 45.0 | 1 |
CATACGA | 25 | 3.8872233E-5 | 45.0 | 18 |
TGTAGCG | 20 | 7.028964E-4 | 45.0 | 1 |
CGATATA | 20 | 7.028964E-4 | 45.0 | 10 |
CGTTTTT | 3945 | 0.0 | 43.574146 | 1 |
TACGGCT | 715 | 0.0 | 39.965034 | 7 |
ACGGCTG | 735 | 0.0 | 38.877552 | 8 |
CGAGACA | 200 | 0.0 | 38.25 | 22 |
CGGGTAT | 30 | 1.13888E-4 | 37.500004 | 6 |
GTTAGCG | 30 | 1.13888E-4 | 37.500004 | 1 |
CGTTAGG | 60 | 1.546141E-10 | 37.500004 | 2 |
ACATACG | 30 | 1.13888E-4 | 37.500004 | 17 |
AGTACGG | 60 | 1.546141E-10 | 37.500004 | 2 |
TGCGTAG | 30 | 1.13888E-4 | 37.500004 | 1 |
GGCGATA | 180 | 0.0 | 37.5 | 8 |
CACGACC | 200 | 0.0 | 37.125 | 27 |