SRR3552359_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552359_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	465903
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8863	1.9023273084740815	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	7375	1.5829475234115253	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG	6276	1.3470615128041674	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGC	5638	1.21012313721955	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	2242	0.4812160471171038	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT	1884	0.4043760181840426	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCT	1148	0.2464032212713805	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTC	1044	0.22408097822937392	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	733	0.1573288860556811	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTA	669	0.14359212110675398	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	586	0.1257772540636141	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTT	501	0.10753311311582024	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAC	30	2.162713E-6	45.000004	9
TTCACGG	35	1.2098462E-7	45.0	2
GCGTTAG	25	3.8872233E-5	45.0	1
ATCCGCA	20	7.028964E-4	45.0	11
CATAGCG	20	7.028964E-4	45.0	1
CATACGA	25	3.8872233E-5	45.0	18
TGTAGCG	20	7.028964E-4	45.0	1
CGATATA	20	7.028964E-4	45.0	10
CGTTTTT	3945	0.0	43.574146	1
TACGGCT	715	0.0	39.965034	7
ACGGCTG	735	0.0	38.877552	8
CGAGACA	200	0.0	38.25	22
CGGGTAT	30	1.13888E-4	37.500004	6
GTTAGCG	30	1.13888E-4	37.500004	1
CGTTAGG	60	1.546141E-10	37.500004	2
ACATACG	30	1.13888E-4	37.500004	17
AGTACGG	60	1.546141E-10	37.500004	2
TGCGTAG	30	1.13888E-4	37.500004	1
GGCGATA	180	0.0	37.5	8
CACGACC	200	0.0	37.125	27