SRR3552358_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552358_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	356424
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7169	2.0113684824815388	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	4506	1.264224631337957	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGC	4368	1.2255066998855295	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG	4207	1.1803357798576977	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1858	0.5212892510044217	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT	1438	0.40345206832312075	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGGGTT	937	0.26288914326756896	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTA	803	0.22529347069782057	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCT	728	0.20425111664758824	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	716	0.20088433999955108	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTC	620	0.17395012681525374	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	458	0.12849864206675196	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	20	7.0267305E-4	45.0	28
CGACGAA	20	7.0267305E-4	45.0	19
CGCATCG	20	7.0267305E-4	45.0	21
TTATGCG	20	7.0267305E-4	45.0	1
ATCGTAT	35	1.208773E-7	45.0	36
CATACGA	35	1.208773E-7	45.0	18
CGTAAGG	20	7.0267305E-4	45.0	2
ATAACGC	20	7.0267305E-4	45.0	11
ACATACG	35	1.208773E-7	45.0	17
TAGTCCG	20	7.0267305E-4	45.0	2
CGTTTTT	3190	0.0	43.800938	1
ACGGGAT	55	6.002665E-11	40.909092	5
TACGGCT	565	0.0	40.61947	7
GGCGTAG	40	3.4492768E-7	39.375	1
CGTTAGG	80	0.0	39.375	2
TACGAAA	40	3.4492768E-7	39.375	20
ATACGAA	40	3.4492768E-7	39.375	19
CCCATTA	40	3.4492768E-7	39.375	33
TACGGGA	70	0.0	38.571426	4
CGATGAA	260	0.0	38.076927	19