SRR3552357_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552357_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	562717
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17596	3.126971461676118	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	14933	2.653731804797083	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	14924	2.6521324218035	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	13438	2.3880565186408087	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	3744	0.6653433253304948	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCT	2531	0.449782039639819	No Hit
GAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT	2480	0.4407188693428491	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTC	2221	0.3946921809719628	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTA	1655	0.29410876159774807	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTT	1172	0.20827520760879803	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	714	0.12688438415757833	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	678	0.12048685218324663	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	573	0.10182738392477925	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCCA	25	3.888258E-5	45.000004	42
ATTACGG	20	7.030212E-4	45.000004	2
TAGCCGT	20	7.030212E-4	45.000004	44
GTATGCG	20	7.030212E-4	45.000004	1
TATCGGG	25	3.888258E-5	45.000004	3
CGATAGA	25	3.888258E-5	45.000004	10
CGTTTTT	7035	0.0	44.00853	1
TACGGCT	1610	0.0	42.624226	7
AACACGT	355	0.0	41.830986	41
TCAAGCG	395	0.0	41.58228	17
ACGGCTG	1675	0.0	40.97015	8
ACCGCGC	55	6.002665E-11	40.909092	35
GACACGA	355	0.0	40.56338	25
GCGTAAG	50	1.0786607E-9	40.500004	1
GAATCTG	2035	0.0	40.2457	1
CGAGACA	370	0.0	40.135136	22
GTCAAGC	415	0.0	40.120483	16
CACGACC	365	0.0	40.068493	27
ACACGAC	360	0.0	40.0	26
CGTAAGG	90	0.0	40.0	2