SRR3552355_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552355_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	383577
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8188	2.134643109466939	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	6423	1.6745008173065643	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG	5742	1.496961496648652	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	4880	1.2722347794575797	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	2081	0.5425247082072179	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT	1213	0.31623376792664837	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT	1100	0.28677423307445443	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC	863	0.22498742103932196	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	662	0.17258594754117165	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	533	0.13895515111698564	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTA	532	0.13869444726873612	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTAGA	25	3.8859296E-5	45.0	31
ATAGCGG	40	6.7939254E-9	45.0	2
TCGGGAT	25	3.8859296E-5	45.0	5
TACGGGT	20	7.027404E-4	45.0	4
TGATTCG	35	1.2091004E-7	45.0	15
TTCGCCA	20	7.027404E-4	45.0	12
CGTTTTT	3995	0.0	43.648315	1
TACGGCT	510	0.0	40.588234	7
TCGTTCA	50	1.0768417E-9	40.5	16
ACGGGTA	45	1.9224899E-8	40.0	5
TTACGGG	90	0.0	40.0	3
TTAACGG	35	6.2374093E-6	38.571426	2
GAATGAC	205	0.0	38.414635	1
ACGGGAT	65	9.094947E-12	38.076927	5
ATGGGAA	190	0.0	37.894737	5
TACGGGA	95	0.0	37.894737	4
ACGGCTG	550	0.0	37.636364	8
AATGACT	210	0.0	37.5	2
GTGTTAT	30	1.13850445E-4	37.499996	45
GCGAATG	30	1.13850445E-4	37.499996	1