SRR3552351_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552351_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431328
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7608	1.7638548853772535	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCG	1040	0.24111580977817346	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTC	954	0.2211773870465168	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGC	931	0.21584501817642257	No Hit
GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	900	0.2086579123080347	Illumina PCR Primer Index 7 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	593	0.1374823799985162	Illumina PCR Primer Index 7 (95% over 23bp)
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	520	0.12055790488908673	No Hit
CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT	497	0.1152255360189925	Illumina PCR Primer Index 7 (95% over 24bp)
AAGCAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG	475	0.11012500927368499	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	70	0.0	45.000004	2
AACACGC	35	1.2095734E-7	45.000004	23
TCGATAA	20	7.0283795E-4	45.0	25
GCTTGCG	25	3.8867394E-5	45.0	1
CGCTCTA	20	7.0283795E-4	45.0	36
TATCTGG	20	7.0283795E-4	45.0	38
ACTACGG	20	7.0283795E-4	45.0	2
GTCGTTT	20	7.0283795E-4	45.0	9
CATACGA	25	3.8867394E-5	45.0	18
TAATGCG	20	7.0283795E-4	45.0	1
ATCGATA	20	7.0283795E-4	45.0	24
AGTCGGC	40	6.7975634E-9	45.0	30
TAGTACG	20	7.0283795E-4	45.0	1
ACGGTCT	20	7.0283795E-4	45.0	30
CGTTTTT	4020	0.0	42.649254	1
ACGGGAC	150	0.0	42.000004	5
TATGCGG	55	6.002665E-11	40.909092	2
TACGGGA	100	0.0	40.5	4
CGACAGG	95	0.0	40.263157	2
ATAACGC	45	1.9235813E-8	40.0	11