SRR3552350_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552350_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	341593
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6073	1.7778467357352172	No Hit
GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	825	0.2415154877295495	Illumina PCR Primer Index 7 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGC	738	0.216046581750797	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCG	696	0.20375124783001994	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTC	615	0.18003881812566416	No Hit
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	613	0.17945332603419858	Illumina PCR Primer Index 7 (95% over 23bp)
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	417	0.12207510107057229	No Hit
CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT	388	0.11358546574432146	Illumina PCR Primer Index 7 (95% over 24bp)
AAGCAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG	372	0.10890152901259686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	25	3.885029E-5	45.000004	21
ATAGCCG	25	3.885029E-5	45.000004	1
TAGCCGT	25	3.885029E-5	45.000004	44
TACGCGG	35	1.208573E-7	45.000004	2
CATCGCC	25	3.885029E-5	45.000004	23
CCAACGG	35	1.208573E-7	45.000004	2
AGTACGG	35	1.208573E-7	45.000004	2
TAGTACG	25	3.885029E-5	45.000004	1
GCGAAGT	20	7.026318E-4	45.0	1
TAGCGAG	20	7.026318E-4	45.0	1
GTAGACG	20	7.026318E-4	45.0	1
TCGCTAA	20	7.026318E-4	45.0	33
GTACTAG	20	7.026318E-4	45.0	1
CTCGCTA	20	7.026318E-4	45.0	32
TATAGCG	20	7.026318E-4	45.0	1
TCATAGG	20	7.026318E-4	45.0	2
ATACGTC	20	7.026318E-4	45.0	41
GACGTAG	30	2.1610067E-6	44.999996	1
CGTTTTT	3425	0.0	43.751823	1
TACGGGA	105	0.0	42.857143	4