SRR3552346_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552346_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295797
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3385	1.144365899586541	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTC	2659	0.8989273048746268	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGC	1890	0.6389517135062222	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCG	1809	0.6115680686416698	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTT	1466	0.49561016507942945	No Hit
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	1126	0.38066647058624664	TruSeq Adapter, Index 21 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT	530	0.17917693553349087	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATCGACT	468	0.1582166147729693	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCT	352	0.1190005307694128	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATCGACTCGTA	340	0.11494369449318283	No Hit
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	300	0.10142090690574955	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	299	0.10108283721606372	TruSeq Adapter, Index 14 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCCG	30	2.1600154E-6	45.000004	32
GTGGCGA	30	2.1600154E-6	45.000004	28
AATATTC	30	2.1600154E-6	45.000004	11
ATAACGC	30	2.1600154E-6	45.000004	11
ACCCGCT	30	2.1600154E-6	45.000004	34
AGGGCGC	30	2.1600154E-6	45.000004	6
TCGTTTA	20	7.024782E-4	45.0	38
CGTATTA	20	7.024782E-4	45.0	12
CGACGGT	25	3.883758E-5	45.0	28
GTTTACG	20	7.024782E-4	45.0	1
GACGTAT	20	7.024782E-4	45.0	10
CGCATCG	20	7.024782E-4	45.0	21
ATAGCGG	25	3.883758E-5	45.0	2
TAACGCC	25	3.883758E-5	45.0	12
CTAACGG	35	1.2078453E-7	45.0	2
TCTACGG	20	7.024782E-4	45.0	2
TCTAACG	25	3.883758E-5	45.0	1
CGGGCTA	20	7.024782E-4	45.0	6
TATTACG	35	1.2078453E-7	45.0	1
GGACGTA	20	7.024782E-4	45.0	9