SRR3552342_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552342_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	278613
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7157	2.5687961437549576	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	991	0.3556905097752079	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	956	0.3431282818820371	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	860	0.3086718853750543	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	859	0.30831296457810653	No Hit
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	848	0.30436483581168144	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	596	0.21391679498085156	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	342	0.12275091255612625	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC	293	0.1051637935056871	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	35	1.2074997E-7	45.000004	5
CGAACGG	20	7.0240756E-4	45.000004	2
CGTATGG	20	7.0240756E-4	45.000004	2
GCGCGCT	20	7.0240756E-4	45.000004	29
CACGACG	20	7.0240756E-4	45.000004	26
TGAAAGG	55	1.8189894E-12	45.000004	2
ACCTACT	20	7.0240756E-4	45.000004	25
CGGATAC	20	7.0240756E-4	45.000004	14
ATAAGTG	20	7.0240756E-4	45.000004	37
GTCCGCA	20	7.0240756E-4	45.000004	23
CGGTCTA	20	7.0240756E-4	45.000004	31
ACGTAGG	20	7.0240756E-4	45.000004	2
CGGTATG	30	2.1595624E-6	45.000004	2
TCGACGG	30	2.1595624E-6	45.000004	2
TCGACAC	20	7.0240756E-4	45.000004	34
TATCGGG	20	7.0240756E-4	45.000004	3
TGCAACA	20	7.0240756E-4	45.000004	20
GGCAACG	25	3.8831742E-5	45.0	1
ACGGGTC	45	3.8198777E-10	45.0	5
TGACCGG	25	3.8831742E-5	45.0	2