SRR3552341_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552341_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	387544
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5050	1.303077844064158	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCG	966	0.2492620192803914	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGC	902	0.23274776541502384	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	895	0.23094151889849926	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	863	0.2226843919658155	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	605	0.15611130607105259	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	471	0.12153458704043928	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	35	1.2091368E-7	45.000004	14
CCGCTCG	20	7.0274924E-4	45.0	19
GGACGCA	20	7.0274924E-4	45.0	9
GTAAGTG	20	7.0274924E-4	45.0	1
CGCGTAA	20	7.0274924E-4	45.0	31
ACGAGTT	20	7.0274924E-4	45.0	36
GCGTAAG	20	7.0274924E-4	45.0	1
ACGGTCT	45	3.8380676E-10	45.0	30
CGTTTTT	2545	0.0	43.320236	1
CGCGAGG	110	0.0	42.954544	2
CACGACG	50	1.0768417E-9	40.5	26
GCGATCA	50	1.0768417E-9	40.5	9
CGTAAGG	50	1.0768417E-9	40.5	2
AATAAGG	45	1.9226718E-8	40.0	2
TTGCTAG	40	3.4503137E-7	39.375	1
CAATTGG	40	3.4503137E-7	39.375	2
ACGGGAT	80	0.0	39.375	5
TACGAAT	40	3.4503137E-7	39.375	12
AGACCTA	40	3.4503137E-7	39.375	32
AAGCTAC	40	3.4503137E-7	39.375	8