SRR3552339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	277939
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6479	2.3310870370836767	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	559	0.20112326805522074	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	548	0.19716556510601246	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	506	0.18205433566358087	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	499	0.17953579742317557	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	392	0.14103814146269505	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	315	0.11333422081823709	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	280	0.10074152961621075	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGT	20	7.024045E-4	45.000004	45
CATATGG	20	7.024045E-4	45.000004	2
CGTATGA	20	7.024045E-4	45.000004	15
TCCGAAT	20	7.024045E-4	45.000004	32
AAGGTCG	20	7.024045E-4	45.000004	26
GTATGAC	20	7.024045E-4	45.000004	16
GTATCAC	20	7.024045E-4	45.000004	24
CGTGTTT	20	7.024045E-4	45.000004	1
TTAGTCA	20	7.024045E-4	45.000004	32
TATAGCG	20	7.024045E-4	45.000004	1
GGACCGT	20	7.024045E-4	45.000004	8
TATCGAT	20	7.024045E-4	45.000004	13
GCGTATG	20	7.024045E-4	45.000004	1
AATCGTA	20	7.024045E-4	45.000004	12
CGTATGG	30	2.1595424E-6	44.999996	2
CGTTTTT	2845	0.0	43.734623	1
CTAGCGG	55	6.002665E-11	40.90909	2
TCTCGTA	40	3.4456207E-7	39.375004	28
GCTAATG	40	3.4456207E-7	39.375004	1
TACGGTT	35	6.2312065E-6	38.571426	33