SRR3552338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	203037
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4908	2.4172933997251733	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	530	0.261036165821993	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	417	0.20538128518447374	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	397	0.19553086383270044	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	317	0.15612917842560717	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	255	0.12559287223510984	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	242	0.11919009835645719	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	224	0.11032471913986122	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATTA	30	2.1566466E-6	45.000004	28
AGGCGTC	30	2.1566466E-6	45.000004	35
CGTCATA	30	2.1566466E-6	45.000004	38
TCGTTTA	20	7.019553E-4	45.0	38
ACCGGGT	20	7.019553E-4	45.0	5
GGCACCG	20	7.019553E-4	45.0	8
TTTCGCG	25	3.8794264E-5	45.0	1
CGCATCG	20	7.019553E-4	45.0	21
CAACCCG	20	7.019553E-4	45.0	23
TAACGCC	25	3.8794264E-5	45.0	12
GTTCGAC	25	3.8794264E-5	45.0	1
ACAATAC	20	7.019553E-4	45.0	14
CATCGTT	20	7.019553E-4	45.0	36
ATAACGC	25	3.8794264E-5	45.0	11
GCAATCG	20	7.019553E-4	45.0	45
ACTCATG	25	3.8794264E-5	45.0	22
TATCGCG	20	7.019553E-4	45.0	32
ATCGCGG	20	7.019553E-4	45.0	33
GCATCGT	20	7.019553E-4	45.0	35
CTAGCGG	20	7.019553E-4	45.0	2