SRR3552335_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552335_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	484782
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7810	1.6110334129567516	No Hit
GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	1068	0.22030520935183237	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	750	0.15470871443246653	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT	672	0.13861900813149003	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	7.029245E-4	45.000004	1
TCGTTTA	25	3.887456E-5	45.000004	38
TCGCAAG	35	1.2099918E-7	45.000004	1
CCGATGT	25	3.887456E-5	45.000004	11
CGTGCAA	20	7.029245E-4	45.000004	10
GACACGA	145	0.0	45.000004	25
ACATGCG	20	7.029245E-4	45.000004	1
CATCGTT	25	3.887456E-5	45.000004	36
TTCGGTT	20	7.029245E-4	45.000004	16
ATTGCGG	50	2.1827873E-11	45.000004	2
CGTTTAT	25	3.887456E-5	45.000004	39
AATACGG	25	3.887456E-5	45.000004	2
TAGTCGA	20	7.029245E-4	45.000004	44
CGTTTTT	4165	0.0	43.7575	1
CACGTGA	155	0.0	42.09677	43
AAACACG	150	0.0	42.0	40
CGTAAGG	60	3.6379788E-12	41.250004	2
GCGAGAC	165	0.0	40.90909	21
TACGAGC	45	1.9243089E-8	40.000004	34
AACACGT	165	0.0	39.545452	41