SRR3552334_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552334_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	381335
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6129	1.6072482200689682	No Hit
GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	949	0.24886254867767188	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	746	0.19562851560963457	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT	618	0.16206222874900023	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	412	0.10804148583266682	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	35	1.209064E-7	45.000004	1
CGCGGGT	35	1.209064E-7	45.000004	4
GTGCGAG	35	1.209064E-7	45.000004	1
TCGTTCA	20	7.0273504E-4	45.0	16
CGACGGT	20	7.0273504E-4	45.0	28
CCGGATG	20	7.0273504E-4	45.0	1
CGTTCAT	25	3.8858852E-5	45.0	17
CGTGTAC	20	7.0273504E-4	45.0	18
TGTAGCG	25	3.8858852E-5	45.0	1
CGGTCTA	20	7.0273504E-4	45.0	31
ACGGTTA	20	7.0273504E-4	45.0	35
TGACCGG	30	2.1616725E-6	44.999996	2
CGTTTTT	3685	0.0	43.59566	1
GCGAGAC	175	0.0	41.142857	21
CACGACC	185	0.0	40.135136	27
TGAATAG	45	1.9224899E-8	40.0	1
CCAGTAG	110	0.0	38.863632	26
ACACGTG	180	0.0	38.75	42
CCTTATC	35	6.237311E-6	38.57143	43
TCCATCG	35	6.237311E-6	38.57143	30