SRR3552329_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552329_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432215
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8752	2.0249181541593884	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC	3344	0.7736890205106255	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCG	3261	0.7544856147981907	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC	2869	0.6637900119153662	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	1767	0.40882431197436464	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	631	0.14599215668128132	TruSeq Adapter, Index 23 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	607	0.14043936466804716	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	604	0.13974526566639286	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	552	0.12771421630438556	TruSeq Adapter, Index 20 (95% over 23bp)
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	546	0.126326018301077	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTC	534	0.12354962229445994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATGG	40	6.7975634E-9	45.000004	2
CACGACG	20	7.028395E-4	45.000004	26
GCGTTAG	20	7.028395E-4	45.000004	1
TACGCTA	20	7.028395E-4	45.000004	1
TGCGATG	20	7.028395E-4	45.000004	1
GGACGTA	20	7.028395E-4	45.000004	8
GCTAACG	40	6.7975634E-9	45.000004	1
TGTAACG	20	7.028395E-4	45.000004	1
ACGAAAG	20	7.028395E-4	45.000004	1
CAAACGC	25	3.886753E-5	45.0	34
CGTTAGG	35	1.2095734E-7	45.0	2
CTAACGG	55	1.8189894E-12	45.0	2
TGCGACG	25	3.886753E-5	45.0	1
AAATTCG	25	3.886753E-5	45.0	30
GCGATAA	25	3.886753E-5	45.0	9
TCGTACA	25	3.886753E-5	45.0	34
AGTACGG	35	1.2095734E-7	45.0	2
CGTTTTT	4355	0.0	42.88175	1
AATGGGC	75	0.0	42.0	4
AATGCGG	50	1.0786607E-9	40.5	2