##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552329_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 432215 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.881880545561817 30.0 25.0 31.0 16.0 33.0 2 28.560739446803094 31.0 28.0 33.0 16.0 33.0 3 28.2083500109899 31.0 26.0 33.0 16.0 34.0 4 32.23455918929237 35.0 32.0 35.0 25.0 37.0 5 33.35184341126523 35.0 32.0 35.0 28.0 37.0 6 33.18414215147554 35.0 33.0 35.0 28.0 37.0 7 34.14181599435466 35.0 33.0 36.0 31.0 37.0 8 34.30359658966024 35.0 35.0 37.0 31.0 37.0 9 35.586682553821596 37.0 35.0 39.0 30.0 39.0 10 35.52778593986789 37.0 34.0 39.0 30.0 39.0 11 35.783422602177154 37.0 35.0 39.0 31.0 39.0 12 35.69727103409183 37.0 35.0 39.0 30.0 39.0 13 35.854801429843945 37.0 35.0 39.0 31.0 39.0 14 36.85872308920329 38.0 36.0 40.0 31.0 41.0 15 37.12447277396666 39.0 36.0 40.0 32.0 41.0 16 36.79267956919588 38.0 35.0 40.0 31.0 41.0 17 35.86416482537626 38.0 34.0 40.0 29.0 41.0 18 35.65881100841017 38.0 34.0 39.0 29.0 41.0 19 35.0558472056731 37.0 33.0 39.0 27.0 40.0 20 35.63622039956966 37.0 34.0 39.0 30.0 40.0 21 35.91476464259686 38.0 34.0 39.0 30.0 40.0 22 36.32839211966267 38.0 35.0 40.0 31.0 41.0 23 36.56100089076038 38.0 35.0 40.0 31.0 41.0 24 36.477438311951225 38.0 35.0 40.0 31.0 41.0 25 35.729861295882834 38.0 34.0 40.0 29.0 41.0 26 35.930863112108554 38.0 35.0 40.0 30.0 41.0 27 36.219203405712435 38.0 35.0 40.0 31.0 41.0 28 36.157555846048844 38.0 35.0 40.0 30.0 41.0 29 36.20168434691068 38.0 35.0 40.0 30.0 41.0 30 35.656846708235484 38.0 35.0 40.0 29.0 41.0 31 35.770621102923315 38.0 35.0 40.0 29.0 41.0 32 35.57862406441239 38.0 35.0 40.0 29.0 41.0 33 35.45075945999098 38.0 35.0 40.0 27.0 41.0 34 35.225612253161046 38.0 35.0 40.0 25.0 41.0 35 34.947419686961354 38.0 34.0 40.0 23.0 41.0 36 34.730724292308224 38.0 34.0 40.0 23.0 41.0 37 34.63530650255081 38.0 34.0 40.0 22.0 41.0 38 34.486679083326585 38.0 34.0 40.0 22.0 41.0 39 34.26885230730076 38.0 34.0 40.0 21.0 41.0 40 34.19207570306445 38.0 34.0 40.0 21.0 41.0 41 34.0804321923117 38.0 33.0 40.0 20.0 41.0 42 34.003468181344935 37.0 33.0 40.0 19.0 41.0 43 33.94701710954039 37.0 33.0 40.0 19.0 41.0 44 33.82557754821096 37.0 33.0 40.0 18.0 41.0 45 33.80378283955901 37.0 33.0 40.0 20.0 41.0 46 33.555107990236344 37.0 33.0 40.0 19.0 41.0 47 33.562053607579564 37.0 33.0 40.0 20.0 41.0 48 33.48941614705644 36.0 33.0 40.0 20.0 41.0 49 33.44170146801939 36.0 33.0 40.0 19.0 41.0 50 33.28491838552572 36.0 33.0 39.0 18.0 40.0 51 30.82666034265354 34.0 28.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 14.0 9 24.0 10 27.0 11 36.0 12 22.0 13 28.0 14 50.0 15 102.0 16 169.0 17 284.0 18 563.0 19 846.0 20 1200.0 21 1705.0 22 2457.0 23 3516.0 24 4999.0 25 7123.0 26 9803.0 27 10691.0 28 10664.0 29 10830.0 30 12462.0 31 15320.0 32 20242.0 33 27936.0 34 37046.0 35 43929.0 36 56170.0 37 72521.0 38 66352.0 39 15082.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69598463727543 19.020626308665825 21.309302083453836 19.97408697060491 2 37.72497483891119 23.017942459192763 23.00429184549356 16.252790856402484 3 29.690778894763024 22.021447659151118 32.863274064990804 15.424499381095059 4 27.270687042328472 22.327082586212878 32.963455687562906 17.438774683895748 5 23.954513378758257 26.863945027359073 30.79624723806439 18.385294355818285 6 23.45314253322999 32.32002591302939 30.727994169568383 13.49883738417223 7 70.83465404948926 5.9993290376317345 18.922526983098688 4.243489929780318 8 71.64582441608921 6.443783765024351 16.986453501151047 4.923938317735386 9 65.6356211607649 6.988420114989068 18.894994389366403 8.480964334879632 10 36.72015085084969 22.629941117268025 25.66778108117488 14.982126950707404 11 28.59572203648647 22.635725275615144 30.88624874194556 17.882303945952824 12 24.544960262832156 20.75749337713869 35.42820124243721 19.26934511759194 13 21.947179065974108 21.705632613398425 38.1058038244855 18.241384496141965 14 19.60112444038268 25.17150029499208 34.81438635864095 20.41298890598429 15 19.192994227409972 22.52652036602154 39.81166780421781 18.468817602350683 16 21.716969563758777 22.304408685492174 34.76950128986731 21.209120460881735 17 20.2868942540171 21.706095346066192 35.231539858635166 22.77547054128154 18 21.857408928426825 21.936304848281527 35.80046967365779 20.40581654963386 19 22.505466029638026 23.536203047094617 32.44241870365443 21.51591221961292 20 23.032518538227503 23.39044225674722 33.89354834977962 19.68349085524565 21 22.601483058200202 24.376756938097937 34.07100632786923 18.95075367583263 22 21.65496338627766 21.033282047129322 33.04443390442257 24.267320662170448 23 20.789653297548675 24.427194798884813 33.24549124856842 21.537660654998092 24 21.279687192716587 22.063093599250372 34.04532466480802 22.611894543225013 25 20.78942193121479 24.519047233437064 32.80149925384357 21.890031581504577 26 19.884548199391507 22.919380400957856 33.58374882870793 23.612322570942702 27 22.009647976122995 22.88698911421399 33.64159041217912 21.461772497483892 28 18.887822033015976 23.750216905938018 35.25004916534595 22.111911895700057 29 21.22092014390986 22.612357275892787 32.64879747347963 23.517925106717723 30 20.6753583286096 22.9809238457712 34.305843156762265 22.037874668856936 31 22.332172645558344 22.56006848443483 31.101882165126156 24.00587670488067 32 21.7454276228266 25.611327695706997 30.89110743495714 21.75213724650926 33 20.06385710815219 23.12784146778802 30.525779993753112 26.282521430306677 34 20.234374096225256 23.384889464733988 32.325347338708745 24.05538910033201 35 19.716576240991174 24.968129287507374 31.094709808775722 24.220584662725727 36 20.947213770924193 24.192357969991786 29.891142139907224 24.969286119176797 37 20.387538609256968 26.344296241453907 31.574332218918826 21.693832930370302 38 20.466665895445555 26.903045937785592 28.1612160614509 24.469072105317956 39 21.62997582221811 24.216651435049684 30.231713383385582 23.921659359346624 40 21.593882674132086 23.933690408708628 31.204840183704867 23.267586733454415 41 19.421352798954224 24.591696262276876 30.408014529805765 25.57893640896313 42 20.13118471131266 24.967666554839603 31.095172541443496 23.805976192404245 43 21.719514593431512 22.483717594252862 30.09150538505142 25.70526242726421 44 20.908344226831556 23.416818018810083 30.56094767650359 25.113890077854773 45 20.464814964774476 22.990409865460474 30.597503557257383 25.947271612507667 46 22.43119743646102 24.40984232384346 29.979061346783432 23.179898892912092 47 19.89010099140474 23.301134851867705 34.02727809076501 22.781486065962543 48 19.969459643927213 24.615064261999237 30.74025658526428 24.675219508809274 49 19.846141387966636 23.20604328864107 33.565008155663264 23.382807167729027 50 20.24663651192115 22.470761079555313 32.436634545307314 24.845967863216224 51 20.159874136714368 22.522355772011615 30.24166213574263 27.07610795553139 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 164.0 1 487.5 2 811.0 3 7591.5 4 14372.0 5 9999.0 6 5626.0 7 5064.5 8 4503.0 9 4251.0 10 3999.0 11 3778.0 12 3557.0 13 3420.0 14 3283.0 15 2996.5 16 2710.0 17 2518.0 18 2326.0 19 2185.0 20 2044.0 21 2505.0 22 2966.0 23 2746.5 24 2527.0 25 2703.0 26 3067.0 27 3255.0 28 3768.0 29 4281.0 30 5040.0 31 5799.0 32 6308.5 33 6818.0 34 7637.5 35 8457.0 36 9429.5 37 10402.0 38 11006.5 39 11611.0 40 12976.0 41 14341.0 42 16417.5 43 18494.0 44 21312.5 45 24131.0 46 32578.5 47 41026.0 48 38488.0 49 35950.0 50 35155.0 51 34360.0 52 30585.0 53 26810.0 54 24391.0 55 21972.0 56 21136.0 57 20300.0 58 19428.0 59 18556.0 60 17696.0 61 16836.0 62 15870.0 63 14904.0 64 13212.5 65 11521.0 66 10032.0 67 8543.0 68 7577.0 69 6611.0 70 5841.0 71 5071.0 72 4279.5 73 3488.0 74 3139.0 75 2269.0 76 1748.0 77 1387.5 78 1027.0 79 851.0 80 675.0 81 533.0 82 391.0 83 267.5 84 144.0 85 107.0 86 70.0 87 48.0 88 26.0 89 26.0 90 26.0 91 16.0 92 6.0 93 5.0 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 432215.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.4299383349692 #Duplication Level Percentage of deduplicated Percentage of total 1 77.18146053343955 28.117158478360615 2 7.752623990933098 5.648552278477911 3 2.6712002533081862 2.9193498152511395 4 1.5079699037415037 2.1974100241716967 5 1.1434737213854163 2.082833857886423 6 0.8920291771260315 1.9497940749416787 7 0.7732823271390958 1.9719439245239119 8 0.7066731727389696 2.0595248084686157 9 0.632500570609626 2.0737761105727355 >10 6.631600134605565 41.93113558562955 >50 0.07296411019240219 1.7976134817061755 >100 0.027119403788326477 1.730808688614766 >500 0.003874200541189497 0.8171825746463299 >1k 0.002582800360792998 2.6441995744385136 >5k 6.457000901982495E-4 2.0587167223099256 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8752 2.0249181541593884 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC 3344 0.7736890205106255 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCG 3261 0.7544856147981907 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC 2869 0.6637900119153662 No Hit GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 1767 0.40882431197436464 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 631 0.14599215668128132 TruSeq Adapter, Index 23 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT 607 0.14043936466804716 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT 604 0.13974526566639286 No Hit CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT 552 0.12771421630438556 TruSeq Adapter, Index 20 (95% over 23bp) CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 546 0.126326018301077 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTC 534 0.12354962229445994 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15362724569947828 0.0 2 0.0 0.0 0.0 0.9798364240019435 0.0 3 0.0 0.0 0.0 1.235958955612369 0.0 4 0.0 0.0 0.0 1.7074835440695024 0.0 5 0.0 0.0 0.0 3.460546255914302 0.0 6 0.0 0.0 0.0 4.056777298335319 0.0 7 0.0 0.0 0.0 4.774938398713603 0.0 8 0.0 0.0 0.0 5.839223534583483 0.0 9 0.0 0.0 0.0 6.233471767523108 0.0 10 0.0 0.0 0.0 7.765116897840195 0.0 11 0.0 0.0 0.0 8.675774788010596 0.0 12 0.0 0.0 0.0 10.13083766181183 0.0 13 0.0 0.0 0.0 10.479969459643927 0.0 14 0.0 0.0 0.0 10.62804391333017 0.0 15 0.0 0.0 0.0 10.957972305449834 0.0 16 0.0 0.0 0.0 11.45008849762271 0.0 17 0.0 0.0 0.0 12.037064886688338 0.0 18 0.0 0.0 0.0 12.707795888620247 0.0 19 0.0 0.0 0.0 13.0849230128524 0.0 20 0.0 0.0 0.0 13.446085860046505 0.0 21 0.0 0.0 0.0 13.852133776014252 0.0 22 0.0 0.0 0.0 14.274608701687818 0.0 23 0.0 0.0 0.0 14.68088798398945 0.0 24 0.0 0.0 0.0 15.038580336175283 0.0 25 0.0 0.0 0.0 15.356246312599053 0.0 26 0.0 0.0 0.0 15.638975972606225 0.0 27 0.0 0.0 0.0 15.9247133949539 0.0 28 0.0 0.0 0.0 16.21507814397927 0.0 29 0.0 0.0 0.0 16.526728595722037 0.0 30 0.0 0.0 0.0 16.885346413243408 0.0 31 0.0 0.0 0.0 17.219439399372998 0.0 32 0.0 0.0 0.0 17.54797959348935 0.0 33 0.0 0.0 0.0 17.884617609291674 0.0 34 0.0 0.0 0.0 18.196036694700553 0.0 35 0.0 0.0 0.0 18.531749245167337 0.0 36 0.0 0.0 0.0 18.849877954258876 0.0 37 0.0 0.0 0.0 19.17633585137027 0.0 38 0.0 0.0 0.0 19.47017109540391 0.0 39 0.0 0.0 0.0 19.798479923186378 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGG 40 6.7975634E-9 45.000004 2 CACGACG 20 7.028395E-4 45.000004 26 GCGTTAG 20 7.028395E-4 45.000004 1 TACGCTA 20 7.028395E-4 45.000004 1 TGCGATG 20 7.028395E-4 45.000004 1 GGACGTA 20 7.028395E-4 45.000004 8 GCTAACG 40 6.7975634E-9 45.000004 1 TGTAACG 20 7.028395E-4 45.000004 1 ACGAAAG 20 7.028395E-4 45.000004 1 CAAACGC 25 3.886753E-5 45.0 34 CGTTAGG 35 1.2095734E-7 45.0 2 CTAACGG 55 1.8189894E-12 45.0 2 TGCGACG 25 3.886753E-5 45.0 1 AAATTCG 25 3.886753E-5 45.0 30 GCGATAA 25 3.886753E-5 45.0 9 TCGTACA 25 3.886753E-5 45.0 34 AGTACGG 35 1.2095734E-7 45.0 2 CGTTTTT 4355 0.0 42.88175 1 AATGGGC 75 0.0 42.0 4 AATGCGG 50 1.0786607E-9 40.5 2 >>END_MODULE