SRR3552322_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552322_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414582
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG	16883	4.072294503861721	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	16243	3.91792214809133	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC	16051	3.8716104413602133	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7836	1.8900965309637177	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	4431	1.0687873569040625	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGTGCTTT	3356	0.8094900405709848	No Hit
GAACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	2852	0.6879218104018023	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTA	2849	0.6871981899841286	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	2786	0.6720021612129808	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC	2125	0.5125644625188744	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	1239	0.29885523249924023	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATG	799	0.19272423790709678	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGT	667	0.16088493952945376	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCATGTGCTT	632	0.15244270132326054	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTAT	603	0.14544770395241471	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	527	0.12711598670468086	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	492	0.11867374849848762	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATGA	30	2.1621308E-6	45.000004	25
CGTTGCC	20	7.028062E-4	45.0	16
AACGGGC	75	0.0	45.0	4
CGCTAAG	20	7.028062E-4	45.0	14
CATACCT	20	7.028062E-4	45.0	32
CTCGAAT	20	7.028062E-4	45.0	43
ATCGGCC	20	7.028062E-4	45.0	13
ATTCTAG	20	7.028062E-4	45.0	29
GATACCT	1820	0.0	44.010986	5
ACGGCTG	1795	0.0	43.871864	8
CGTTTTT	4590	0.0	43.823532	1
TGATACC	1835	0.0	43.52861	4
GCTATAC	140	0.0	43.39286	33
ATACCTG	1865	0.0	42.949062	6
CGGCTAT	100	0.0	42.75	31
TACGGCT	1850	0.0	42.445946	7
CCGATGA	1365	0.0	42.197803	18
TGAATGA	1315	0.0	41.920155	22
GATGAAT	1355	0.0	41.845016	20
CGATGAA	1335	0.0	41.797752	19