SRR3552301_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552301_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407193
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	7936	1.9489529535134447	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	7740	1.900818530770421	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6980	1.714174850746452	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	6333	1.555282138936573	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3743	0.9192201241180472	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTT	2265	0.5562472832293286	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTA	1708	0.41945711247491974	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	1536	0.3772167006800215	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	1405	0.3450452242548374	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1070	0.2627746547705879	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	816	0.20039637223626142	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	810	0.1989228694992301	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTC	789	0.1937656099196204	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATG	496	0.12180955959459029	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGGTTGTCT	445	0.10928478632982394	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGT	443	0.10879361875081349	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	426	0.10461869432922472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	25	3.8863524E-5	45.000004	21
TTATGCG	25	3.8863524E-5	45.000004	1
TGCGGTC	25	3.8863524E-5	45.000004	26
TAACGCC	25	3.8863524E-5	45.000004	12
TACCGAT	20	7.0279156E-4	45.0	30
CGTTTTT	3955	0.0	43.2933	1
TACGGCT	990	0.0	42.045452	7
AACACGT	75	0.0	42.0	41
ACGGGCT	135	0.0	41.666668	5
TACGGGT	65	0.0	41.53846	4
ACGGGCC	65	0.0	41.53846	5
GTGTACG	50	1.0786607E-9	40.500004	1
GTGTAAG	50	1.0786607E-9	40.500004	1
GTCAAGC	95	0.0	40.26316	16
TATGCGG	45	1.9230356E-8	40.000004	2
GACCTAT	45	1.9230356E-8	40.000004	33
CGACCAC	855	0.0	40.0	12
ACGGCTG	1040	0.0	39.80769	8
TGATCCG	85	0.0	39.705883	4
ATCCGGC	85	0.0	39.705883	6