SRR3552300_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552300_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	438460
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	10630	2.424394471559549	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	10284	2.3454819139716276	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	9405	2.145007526342198	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7662	1.7474798157186517	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3965	0.9043014186014688	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	2075	0.47324727455184057	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	2057	0.46914199698946313	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTA	1665	0.3797381745199106	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTC	1190	0.2714044610682845	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1078	0.24586051179126944	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTT	1026	0.23400082105551248	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	896	0.20435159421612006	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	738	0.16831638005747387	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATG	490	0.11175477808694066	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGT	468	0.10673721662181272	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	439	0.10012315832687133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCTA	20	7.028507E-4	45.000004	1
CGCATCG	20	7.028507E-4	45.000004	21
TAACGCC	20	7.028507E-4	45.000004	12
TATTGCG	20	7.028507E-4	45.000004	1
GTAGACG	20	7.028507E-4	45.000004	1
CTACGGG	35	1.209628E-7	45.000004	3
TACGACC	20	7.028507E-4	45.000004	6
TACGAAG	20	7.028507E-4	45.000004	1
TCATGCG	20	7.028507E-4	45.000004	1
CATACGC	20	7.028507E-4	45.000004	22
CGTACAA	20	7.028507E-4	45.000004	17
CGGCTAG	20	7.028507E-4	45.000004	3
ATAACGC	20	7.028507E-4	45.000004	11
CGCACGG	40	6.7975634E-9	45.000004	2
TCGGTAT	20	7.028507E-4	45.000004	33
TCTATTG	20	7.028507E-4	45.000004	1
CGAATAT	55	1.8189894E-12	45.0	14
AATACGG	25	3.886846E-5	45.0	2
CGCCCGA	25	3.886846E-5	45.0	35
TATGACG	30	2.16242E-6	44.999996	1