SRR3552293_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552293_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587112
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16416	2.7960593549442017	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG	10537	1.7947171919497473	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTC	9689	1.6502813773181266	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	8488	1.445720748341032	No Hit
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	3523	0.6000558666830179	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTA	2716	0.46260338742863366	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT	2469	0.42053304991211216	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC	2102	0.3580236820231915	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCGTTTGT	2067	0.35206229816457507	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT	1930	0.3287277384894194	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTC	1453	0.24748259275913284	No Hit
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT	1159	0.19740696834675497	TruSeq Adapter, Index 27 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	993	0.16913297633160282	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	720	0.1226341822343948	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG	641	0.10917848723923204	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGT	626	0.10662360844268214	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATG	622	0.10594230743026885	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGCAT	20	7.030464E-4	45.0	25
TCGATTA	20	7.030464E-4	45.0	44
CGTTCGA	25	3.8884664E-5	45.0	14
TAGCCGT	50	2.1827873E-11	45.0	44
TATAGCG	20	7.030464E-4	45.0	1
ATACCGG	20	7.030464E-4	45.0	2
CGGTCTA	55	1.8189894E-12	44.999996	31
CGTTTTT	8645	0.0	43.516483	1
TACGGCT	1020	0.0	41.47059	7
ACTAAGG	60	3.6379788E-12	41.250004	2
TCGATCA	55	6.002665E-11	40.90909	17
GTAGCCG	55	6.002665E-11	40.90909	43
GCCTCGA	55	6.002665E-11	40.90909	14
CGCATGG	50	1.0804797E-9	40.5	2
TGATACC	1165	0.0	39.399143	4
ACACGAC	80	0.0	39.375	26
CTCGAGG	40	3.45437E-7	39.375	2
CGATGAA	350	0.0	39.214287	19
ACGGCTG	1085	0.0	38.986176	8
CGCCATT	35	6.24307E-6	38.571426	24