SRR3552287_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552287_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1103785
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25170	2.280335391403217	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	6837	0.6194141069139371	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG	5051	0.4576072332927155	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC	4101	0.37153974732398065	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	2557	0.2316574332863737	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT	1835	0.16624614395013523	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT	1307	0.1184107412222489	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1270	0.1150586391371508	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	1211	0.10971339527172412	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1185	0.10735786407679031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.033166E-4	45.0	21
TGTTACG	20	7.033166E-4	45.0	1
TCGAACG	20	7.033166E-4	45.0	1
CGTTTTT	16330	0.0	44.228416	1
CACGACC	580	0.0	40.732758	27
ACACGAC	595	0.0	39.705883	26
TCAAGCG	575	0.0	39.52174	17
TAGCACG	40	3.4580626E-7	39.375	1
CGCACGG	80	0.0	39.375	2
ACGACCA	590	0.0	39.279663	28
CGACCAA	585	0.0	39.23077	29
CATACGA	70	0.0	38.571426	18
ACATACG	70	0.0	38.571426	17
TAAGGGA	920	0.0	38.39674	4
GCGAGAC	610	0.0	37.991802	21
CACGTGA	545	0.0	37.98165	43
GTTTTTT	19825	0.0	37.384617	2
AGACACG	620	0.0	37.379032	24
ACACGTG	560	0.0	37.36607	42
CGAGACA	615	0.0	37.317074	22