SRR3552286_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552286_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	848668
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18016	2.1228560520721884	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	4526	0.5333063105949559	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG	3608	0.42513680261303594	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC	3288	0.3874306560398177	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	2173	0.2560483015737603	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT	1449	0.17073814495185397	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT	1274	0.1501175960446252	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1152	0.13574212766358576	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	1066	0.12560860077203334	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	925	0.10899432993820904	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	888	0.10463455674068069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTAAG	25	3.889941E-5	45.0	1
TACCGCG	20	7.0322433E-4	45.0	1
CGTTTTT	13915	0.0	44.143013	1
CTAACGG	70	0.0	41.785717	2
TACGAAT	55	6.002665E-11	40.909092	12
CGATGTA	40	3.4567893E-7	39.375	10
ACAACGA	345	0.0	39.130436	13
TCGATAG	35	6.246357E-6	38.57143	1
CTTGCGG	70	0.0	38.57143	2
TATCGAG	35	6.246357E-6	38.57143	1
GTTTTTT	16165	0.0	38.444168	2
CGCGAGG	170	0.0	38.38235	2
CACAACG	360	0.0	38.125	12
GCGAGAC	375	0.0	37.8	21
TAGCCGT	30	1.1396704E-4	37.499996	44
CGAATAT	60	1.546141E-10	37.499996	14
CGACCAA	385	0.0	36.818184	29
TACGGCT	440	0.0	36.81818	7
CGTAAGG	110	0.0	36.81818	2
GCAAGCG	105	0.0	36.42857	1