##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552286_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 848668 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.95867052840451 28.0 16.0 31.0 16.0 33.0 2 27.26637389414942 30.0 25.0 33.0 16.0 33.0 3 27.363593301503062 31.0 25.0 33.0 16.0 34.0 4 30.210856306588678 32.0 28.0 35.0 19.0 37.0 5 32.39669694156019 33.0 32.0 35.0 28.0 37.0 6 31.391016274915515 35.0 31.0 35.0 17.0 37.0 7 33.47056210438004 35.0 32.0 35.0 29.0 37.0 8 34.19977659108155 35.0 35.0 37.0 32.0 37.0 9 35.577406005646495 37.0 35.0 39.0 30.0 39.0 10 35.690454924658404 37.0 35.0 39.0 31.0 39.0 11 36.0542508966993 37.0 35.0 39.0 31.0 39.0 12 35.829568217489054 37.0 35.0 39.0 31.0 39.0 13 36.109872176163115 37.0 35.0 39.0 32.0 39.0 14 36.54285185726338 38.0 35.0 40.0 31.0 41.0 15 36.878919671767996 38.0 35.0 40.0 32.0 41.0 16 36.58042721064067 38.0 34.0 40.0 30.0 41.0 17 36.437709445861046 38.0 34.0 40.0 31.0 41.0 18 36.08418604212719 38.0 34.0 39.0 30.0 40.0 19 35.37748683819821 37.0 34.0 39.0 27.0 41.0 20 35.80355686793894 37.0 34.0 39.0 31.0 40.0 21 35.56203721596667 37.0 34.0 39.0 30.0 40.0 22 36.141677310797625 38.0 34.0 40.0 31.0 40.0 23 36.67334693896789 38.0 35.0 40.0 32.0 41.0 24 36.68162697309195 38.0 35.0 40.0 32.0 41.0 25 34.66129157691818 36.0 33.0 39.0 25.0 41.0 26 35.378358792837716 37.0 34.0 39.0 29.0 41.0 27 36.145675340651465 38.0 35.0 40.0 31.0 41.0 28 36.244230959574296 38.0 35.0 40.0 31.0 41.0 29 36.313867142392546 38.0 35.0 40.0 31.0 41.0 30 35.47134568523852 38.0 34.0 40.0 29.0 41.0 31 35.45586849038729 37.0 34.0 40.0 29.0 41.0 32 35.15357124340731 38.0 34.0 40.0 26.0 41.0 33 34.920514264706576 38.0 35.0 40.0 23.0 41.0 34 34.57088284228933 38.0 34.0 40.0 18.0 41.0 35 34.30838678965155 38.0 34.0 40.0 17.0 41.0 36 34.0194127738998 38.0 34.0 40.0 15.0 41.0 37 34.072616146714616 38.0 34.0 40.0 15.0 41.0 38 33.752494497259235 38.0 33.0 40.0 15.0 41.0 39 33.71487908110121 38.0 33.0 40.0 15.0 41.0 40 33.531001522385665 38.0 33.0 40.0 15.0 41.0 41 33.405998576592964 38.0 33.0 40.0 14.0 41.0 42 33.58835257132353 38.0 33.0 40.0 12.0 41.0 43 33.60043621298317 38.0 33.0 40.0 12.0 41.0 44 33.60113377669477 38.0 33.0 40.0 12.0 41.0 45 33.596643210301316 38.0 33.0 40.0 12.0 41.0 46 33.43926128945595 38.0 33.0 40.0 10.0 41.0 47 33.45124477416375 38.0 33.0 40.0 10.0 41.0 48 33.419738932067666 38.0 33.0 40.0 10.0 41.0 49 33.44046670782921 37.0 33.0 40.0 10.0 41.0 50 33.39531477562486 37.0 33.0 40.0 10.0 41.0 51 32.400037470483156 36.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 17.0 9 50.0 10 55.0 11 46.0 12 49.0 13 51.0 14 89.0 15 134.0 16 232.0 17 406.0 18 783.0 19 1414.0 20 2194.0 21 3590.0 22 5247.0 23 8178.0 24 12839.0 25 19928.0 26 25655.0 27 26555.0 28 23761.0 29 21856.0 30 23029.0 31 27843.0 32 37115.0 33 50296.0 34 64952.0 35 91966.0 36 124104.0 37 152533.0 38 107199.0 39 16502.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.511884506073045 17.429901916886227 20.402206752228196 26.65600682481253 2 42.83323985351162 18.80488011802024 21.406839894988384 16.95504013347976 3 27.894535908034708 18.8318635791617 37.85355403997794 15.420046472825652 4 23.95070863989216 21.888300254045163 37.192282494450126 16.968708611612552 5 22.409705562127947 25.069402876036328 35.74872623923607 16.77216532259965 6 22.204914053552155 28.295517210499277 35.28588329004982 14.213685445898749 7 68.82950694500087 4.145672984017308 23.29285421389754 3.731965857084278 8 69.93794982254545 4.407966366117257 21.663713018518433 3.990370792818864 9 63.961643422398396 5.862480970179151 23.47490420282136 6.700971404601093 10 30.230667351661662 28.017552211229834 29.423284488162626 12.328495948945879 11 23.045171963594715 21.469172868542234 39.700330400109344 15.785324767753703 12 20.171020941051154 20.366975071523846 41.775464610424805 17.686539377000194 13 19.674831618489208 20.96508882154152 43.07997945015012 16.280100109819152 14 18.128408282155096 22.764850330164446 41.08355682080625 18.023184566874207 15 17.679351642809674 22.167325738686976 42.84466952919163 17.308653089311722 16 20.583785414319852 22.844151069676247 39.69043253663388 16.881630979370023 17 20.257627246461514 21.93684691775818 39.885090518318115 17.92043531746219 18 21.023062021897847 21.43453034637809 39.72024395876833 17.82216367295574 19 19.722435628537895 23.614299113434228 38.385917696908564 18.277347561119306 20 21.584530110714674 23.107151442024442 39.01160406660791 16.296714380652976 21 21.044153897637237 23.958367700914845 38.63631007649634 16.36116832495157 22 20.48339279906866 20.83252814999505 39.30029175130911 19.38378729962718 23 19.084023434370096 23.76394538264669 39.477510640203235 17.67452054277998 24 19.409121116856063 21.88712193696475 40.07515306338875 18.628603882790443 25 19.131509612710744 23.256326384404737 38.48795995607234 19.12420404681218 26 18.939561760311452 22.89576135779834 39.068281118175776 19.096395763714433 27 19.57231803249327 22.17027153138801 38.98909821037202 19.2683122257467 28 18.141016274915515 23.41174640731122 39.84066796438655 18.606569353386718 29 19.18818666427861 21.768465406967152 39.691257358590164 19.35209057016407 30 20.00299292538425 21.377264136270014 40.35865615293613 18.261086785409606 31 21.103423246782015 21.901026078513624 38.073074512058895 18.922476162645463 32 20.39419419608139 22.539202609265345 38.10005797320036 18.96654522145291 33 19.182295078876546 22.757898259390007 36.44416898009587 21.61563768163758 34 19.570668388580696 23.934919191014625 36.44381548497174 20.05059693543294 35 18.637912587725708 24.471053462602573 35.45520745450518 21.435826495166545 36 20.32043154684753 25.725725489826413 33.75018263914746 20.203660324178596 37 20.432842996318936 25.041123266106418 34.23128950308012 20.294744234494523 38 20.39242672046077 25.90671499337786 32.7208048376986 20.98005344846277 39 21.36795543133475 23.90840705670533 32.90686110469583 21.816776407264086 40 21.60302968887716 23.631031215976094 33.396098356483336 21.369840738663413 41 19.535554539584385 25.1985464280496 33.31396965597854 21.95192937638747 42 20.95236299707306 25.043126405143116 33.0074893833631 20.997021214420716 43 21.36159251910052 24.187314709639104 33.47504560087101 20.976047170389364 44 21.52478943473773 24.784250142576365 32.38993340151862 21.301027021167286 45 21.09647117600758 23.654597557584356 32.57410436118718 22.674826905220886 46 21.378913780182593 24.417086540319655 32.273044347141635 21.930955332356117 47 19.743056177445126 24.26531930036245 34.71192504018062 21.27969948201181 48 20.50896227971362 24.15738545579661 33.46349809348296 21.8701541710068 49 20.48080050149175 23.61076416219299 34.256623320309004 21.651812016006257 50 19.40558616561482 23.368737833876143 34.9147134097197 22.310962590789334 51 19.676363430693748 22.84803951604161 33.379012758817346 24.096584294447297 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 165.0 1 507.0 2 849.0 3 17469.5 4 34090.0 5 24190.5 6 14291.0 7 13789.0 8 13287.0 9 13177.0 10 13067.0 11 12622.5 12 12178.0 13 11698.0 14 11218.0 15 10628.0 16 10038.0 17 9374.5 18 8711.0 19 8113.0 20 7515.0 21 7075.0 22 6635.0 23 6627.0 24 6619.0 25 6851.0 26 7726.0 27 8369.0 28 9734.0 29 11099.0 30 12941.5 31 14784.0 32 16487.0 33 18190.0 34 19762.5 35 21335.0 36 23783.5 37 26232.0 38 28356.0 39 30480.0 40 32537.0 41 34594.0 42 36485.5 43 38377.0 44 41851.0 45 45325.0 46 57796.0 47 70267.0 48 67043.5 49 63820.0 50 63549.5 51 63279.0 52 58084.5 53 52890.0 54 48987.5 55 45085.0 56 41037.5 57 36990.0 58 33598.0 59 30206.0 60 27396.0 61 24586.0 62 22644.5 63 20703.0 64 18197.0 65 15691.0 66 12783.0 67 9875.0 68 8404.5 69 6934.0 70 5716.0 71 4498.0 72 3905.5 73 3313.0 74 2936.5 75 2192.0 76 1824.0 77 1351.0 78 878.0 79 660.0 80 442.0 81 322.0 82 202.0 83 131.5 84 61.0 85 38.0 86 15.0 87 14.0 88 13.0 89 7.0 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 848668.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.78796513747497 #Duplication Level Percentage of deduplicated Percentage of total 1 75.49608182168458 30.793315533588288 2 7.727127915481136 6.303476480589085 3 3.282872139692493 4.017050231536957 4 2.1723142159955167 3.5441710603866556 5 1.7081342012886847 3.4835659126145764 6 1.3600130281164033 3.3283298386394176 7 1.1783209078886767 3.3642918478204837 8 1.0326730214675506 3.3696504958423517 9 0.950738787601798 3.490083047119261 >10 5.010239827039427 30.093525080109018 >50 0.05578311678814296 1.5672018968133854 >100 0.020736047771155865 1.5780371086101974 >500 0.002336456086792429 0.7130769330352476 >1k 0.002336456086792429 2.2080845357068744 >5k 0.0 0.0 >10k+ 2.920570108490536E-4 2.146139997588209 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18016 2.1228560520721884 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC 4526 0.5333063105949559 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG 3608 0.42513680261303594 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC 3288 0.3874306560398177 No Hit GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC 2173 0.2560483015737603 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT 1449 0.17073814495185397 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTT 1274 0.1501175960446252 No Hit CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC 1152 0.13574212766358576 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC 1066 0.12560860077203334 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT 925 0.10899432993820904 No Hit CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG 888 0.10463455674068069 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0999212884190284 0.0 2 0.0 0.0 0.0 0.5769040425702395 0.0 3 0.0 0.0 0.0 0.811153478156358 0.0 4 0.0 0.0 0.0 1.2407678856749635 0.0 5 0.0 0.0 0.0 2.435463573505776 0.0 6 0.0 0.0 0.0 3.2667662737371974 0.0 7 0.0 0.0 0.0 3.9693967487875117 0.0 8 0.0 0.0 0.0 4.896496627656516 0.0 9 0.0 0.0 0.0 5.420376401608167 0.0 10 0.0 0.0 0.0 6.581607884355249 0.0 11 0.0 0.0 0.0 7.323947645015483 0.0 12 0.0 0.0 0.0 8.272728558164088 0.0 13 0.0 0.0 0.0 8.585925238137882 0.0 14 0.0 0.0 0.0 8.74169875616849 0.0 15 0.0 0.0 0.0 8.988438352806988 0.0 16 0.0 0.0 0.0 9.286081247319329 0.0 17 0.0 0.0 0.0 9.68553073757936 0.0 18 0.0 0.0 0.0 10.116323462178379 0.0 19 0.0 0.0 0.0 10.473117874127457 0.0 20 0.0 0.0 0.0 10.74389513920638 0.0 21 0.0 0.0 0.0 11.035764280024697 0.0 22 0.0 0.0 0.0 11.368992350365515 0.0 23 0.0 0.0 0.0 11.68136420838302 0.0 24 0.0 0.0 0.0 11.945425066103589 0.0 25 0.0 0.0 0.0 12.175314728492179 0.0 26 0.0 0.0 0.0 12.403201251844067 0.0 27 0.0 0.0 0.0 12.645934570409159 0.0 28 0.0 0.0 0.0 12.893381157295904 0.0 29 0.0 0.0 0.0 13.149547290577706 0.0 30 0.0 0.0 0.0 13.454849246112731 0.0 31 0.0 0.0 0.0 13.73399256246259 0.0 32 0.0 0.0 0.0 14.03340293259555 0.0 33 0.0 0.0 0.0 14.30830430745592 0.0 34 0.0 0.0 0.0 14.572836492008653 0.0 35 0.0 0.0 0.0 14.865294791367178 0.0 36 0.0 0.0 0.0 15.141963641848166 0.0 37 0.0 0.0 0.0 15.416511521584413 0.0 38 0.0 0.0 0.0 15.725701923484802 0.0 39 0.0 0.0 0.0 16.05091743767881 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTAAG 25 3.889941E-5 45.0 1 TACCGCG 20 7.0322433E-4 45.0 1 CGTTTTT 13915 0.0 44.143013 1 CTAACGG 70 0.0 41.785717 2 TACGAAT 55 6.002665E-11 40.909092 12 CGATGTA 40 3.4567893E-7 39.375 10 ACAACGA 345 0.0 39.130436 13 TCGATAG 35 6.246357E-6 38.57143 1 CTTGCGG 70 0.0 38.57143 2 TATCGAG 35 6.246357E-6 38.57143 1 GTTTTTT 16165 0.0 38.444168 2 CGCGAGG 170 0.0 38.38235 2 CACAACG 360 0.0 38.125 12 GCGAGAC 375 0.0 37.8 21 TAGCCGT 30 1.1396704E-4 37.499996 44 CGAATAT 60 1.546141E-10 37.499996 14 CGACCAA 385 0.0 36.818184 29 TACGGCT 440 0.0 36.81818 7 CGTAAGG 110 0.0 36.81818 2 GCAAGCG 105 0.0 36.42857 1 >>END_MODULE