##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552282_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 416732 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.826053674783793 28.0 16.0 31.0 16.0 33.0 2 26.96686599541192 30.0 25.0 31.0 16.0 33.0 3 27.119594847527907 30.0 25.0 33.0 16.0 34.0 4 30.904703742453183 33.0 28.0 35.0 19.0 37.0 5 32.51443613641381 35.0 32.0 35.0 28.0 37.0 6 31.45651881784936 35.0 31.0 35.0 17.0 37.0 7 33.13282877244848 35.0 32.0 35.0 28.0 37.0 8 33.363802155821965 35.0 33.0 36.0 28.0 37.0 9 34.90288722728276 37.0 34.0 39.0 28.0 39.0 10 35.11192325043433 37.0 34.0 39.0 30.0 39.0 11 35.504300125740286 37.0 34.0 39.0 30.0 39.0 12 35.337415893187945 37.0 34.0 39.0 30.0 39.0 13 35.43848084620331 37.0 34.0 39.0 30.0 39.0 14 35.95018861042588 38.0 34.0 40.0 30.0 41.0 15 36.21011825345786 38.0 34.0 40.0 30.0 41.0 16 35.935349337223926 38.0 34.0 40.0 30.0 41.0 17 35.702940978854514 37.0 34.0 40.0 29.0 41.0 18 35.487529155428426 37.0 34.0 39.0 27.0 40.0 19 34.850181891479416 37.0 33.0 39.0 27.0 40.0 20 35.016051083190156 36.0 33.0 39.0 28.0 40.0 21 35.18502058877168 37.0 34.0 39.0 29.0 40.0 22 35.76852509526506 37.0 34.0 39.0 30.0 40.0 23 36.2276451052475 38.0 35.0 40.0 31.0 41.0 24 36.23792989259284 38.0 35.0 40.0 31.0 41.0 25 34.40783765105631 36.0 33.0 39.0 25.0 40.0 26 35.032906040332875 37.0 33.0 39.0 27.0 40.0 27 35.63559553861955 37.0 34.0 40.0 30.0 41.0 28 35.62663294395439 38.0 34.0 40.0 30.0 41.0 29 35.79510812704568 38.0 35.0 40.0 30.0 41.0 30 34.99171409922924 37.0 34.0 40.0 26.0 41.0 31 35.150972327539044 37.0 34.0 40.0 27.0 41.0 32 34.88012439649463 37.0 34.0 40.0 25.0 41.0 33 34.776376664139065 38.0 34.0 40.0 24.0 41.0 34 34.68415192497817 38.0 34.0 40.0 22.0 41.0 35 34.55341322480635 38.0 34.0 40.0 21.0 41.0 36 34.28418503978576 38.0 34.0 40.0 20.0 41.0 37 34.364402061756714 38.0 34.0 40.0 19.0 41.0 38 34.00969208028181 38.0 33.0 40.0 18.0 41.0 39 34.02830116237774 38.0 34.0 40.0 18.0 41.0 40 33.71751149419771 37.0 33.0 40.0 18.0 41.0 41 33.64349030072085 37.0 33.0 40.0 18.0 41.0 42 33.89991889271762 38.0 33.0 40.0 18.0 41.0 43 33.93965666183542 38.0 33.0 40.0 18.0 41.0 44 34.10557144639721 38.0 34.0 40.0 18.0 41.0 45 34.09909726154939 38.0 34.0 40.0 18.0 41.0 46 33.925573270111244 37.0 33.0 40.0 18.0 41.0 47 33.819593887678415 37.0 33.0 40.0 19.0 41.0 48 33.84986754076961 37.0 33.0 40.0 18.0 41.0 49 33.92407350527437 37.0 34.0 40.0 18.0 41.0 50 33.77127746369369 37.0 33.0 40.0 18.0 41.0 51 32.68012775596787 35.0 31.0 39.0 16.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 12.0 9 23.0 10 29.0 11 29.0 12 40.0 13 34.0 14 48.0 15 91.0 16 126.0 17 267.0 18 426.0 19 849.0 20 1520.0 21 2211.0 22 3205.0 23 4386.0 24 5988.0 25 8078.0 26 10095.0 27 10788.0 28 10722.0 29 11298.0 30 13224.0 31 16937.0 32 22473.0 33 30063.0 34 36817.0 35 46660.0 36 60560.0 37 68873.0 38 44440.0 39 6419.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.67379514892065 16.16050603265408 18.832007141280247 20.333691677145023 2 37.63737845905762 26.56791415106111 19.33592812646977 16.458779263411497 3 27.62902776844591 26.387942370636285 31.064809037942855 14.918220822974956 4 24.556069608285423 20.620686676329154 38.21616770490387 16.607076010481556 5 28.129589280400836 23.5249512876381 29.908190395745947 18.43726903621512 6 21.850733804939384 33.79270130443546 30.940028603514968 13.416536287110182 7 65.63186892295289 4.973700123820585 25.351544877763168 4.042886075463367 8 64.96885288386781 11.041388710250233 18.62683931159594 5.362919094286016 9 59.78038643540693 5.475461447645009 19.15523645892324 15.58891565802482 10 36.43852643905436 20.389362947889772 27.02408262384458 16.148027989211293 11 30.310127372028067 21.13780559208316 31.136077862991087 17.41598917289769 12 24.015194417515335 19.041254331320847 35.662008197114694 21.281543054049127 13 23.658130405152473 20.314494687233044 39.455093441348396 16.57228146626609 14 20.33537141376232 25.744603246210996 34.164642983980116 19.75538235604657 15 18.788813913978288 21.01134542103798 41.18810170565255 19.011738959331176 16 21.293541172744114 22.398087979804767 33.1184070337771 23.189963813674016 17 20.692195463751283 23.46664043078045 35.85109854774771 19.99006555772055 18 22.17156349884338 21.08621368169471 34.901087509478515 21.841135309983393 19 20.37808471631648 23.35841740015166 33.40516207058733 22.85833581294453 20 24.33794381041053 22.661806628720615 36.78095274660933 16.219296814259522 21 23.00759240951019 26.752445216590036 33.069694671875446 17.170267702024322 22 20.662920054135512 20.37592505495138 36.262394056611924 22.698760834301183 23 22.02854592399912 24.74539992129234 34.8123014311356 18.413752723572944 24 22.682443392876 22.050142537650096 32.917558526822994 22.34985554265091 25 19.64068034132248 27.040400065269765 32.12640258007544 21.19251701333231 26 19.47318660434044 21.54838121382567 36.57962431490742 22.398807866926465 27 23.03566800725646 22.86289509804863 32.533618728583356 21.567818166111554 28 17.578923624775637 24.721163721528463 37.30863000681493 20.391282646880967 29 22.09957478667345 20.97031185510112 35.60033786702245 21.32977549120298 30 22.402167340161064 24.356900837948608 34.921484311259995 18.319447510630333 31 22.738114663620745 20.985669447030705 33.336532831652 22.939683057696552 32 23.768753059520268 24.249637656815413 31.72062620581093 20.260983077853393 33 22.324659493391437 24.00943532054174 29.718860082739027 23.9470451033278 34 21.337694249541673 23.048625975447052 33.3355729821564 22.278106792854878 35 22.976397300903216 24.13445571734352 31.522417284969716 21.366729696783544 36 23.039027480491058 26.179175105343482 31.701429215898948 19.080368198266513 37 23.271551020799937 24.106380119597247 30.913392780012096 21.70867607959072 38 21.250347945442154 27.347071979113675 29.357476747645965 22.045103327798202 39 23.38577311077623 23.68260656729025 27.88050833629287 25.051111985640652 40 21.503268287532514 24.777554879394913 32.34668803931544 21.37248879375714 41 22.073418887918375 25.243561809508268 28.349874739640825 24.33314456293253 42 21.451436414770164 22.97615733852932 33.848372575180214 21.724033671520306 43 25.155975543034852 22.97759711277272 28.74341303283645 23.12301431135598 44 22.70907921637887 22.726836432047453 30.512175690851674 24.051908660722 45 21.241229375233964 21.546461514834476 31.17975101504084 26.032558094890724 46 25.20084850695411 24.199485520670358 29.117754336120093 21.481911636255436 47 19.48494476066153 23.750275956729986 36.022191720338256 20.742587562270238 48 21.88960770951115 23.8397819221946 30.354280448825627 23.916329919468627 49 21.080934509468914 21.86753117111237 34.76334910686004 22.28818521255867 50 21.56133918201626 22.29082479867157 32.196951518001974 23.950884501310192 51 20.81097683883167 21.497029265811122 30.952026722209958 26.73996717314725 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 73.0 1 282.5 2 492.0 3 6480.0 4 12468.0 5 8648.0 6 4828.0 7 4641.5 8 4455.0 9 4345.0 10 4235.0 11 4099.5 12 3964.0 13 3786.5 14 3609.0 15 3527.0 16 3445.0 17 3154.0 18 2863.0 19 2701.5 20 2540.0 21 2419.5 22 2299.0 23 2303.5 24 2308.0 25 2356.0 26 2599.5 27 2795.0 28 3126.5 29 3458.0 30 3960.5 31 4463.0 32 5062.0 33 5661.0 34 6417.0 35 7173.0 36 8244.0 37 9315.0 38 10219.5 39 11124.0 40 12330.5 41 13537.0 42 14650.5 43 15764.0 44 18236.5 45 20709.0 46 38639.0 47 56569.0 48 44883.5 49 33198.0 50 33529.5 51 33861.0 52 30458.5 53 27056.0 54 25511.0 55 23966.0 56 22498.5 57 21031.0 58 19625.0 59 18219.0 60 17100.0 61 15981.0 62 14762.5 63 13544.0 64 11810.0 65 10076.0 66 8331.0 67 6586.0 68 5460.5 69 4335.0 70 3849.5 71 3364.0 72 2675.0 73 1986.0 74 1677.0 75 1118.0 76 868.0 77 603.5 78 339.0 79 285.0 80 231.0 81 178.0 82 125.0 83 78.0 84 31.0 85 20.0 86 9.0 87 6.0 88 3.0 89 2.0 90 1.0 91 1.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 416732.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.09023135331974 #Duplication Level Percentage of deduplicated Percentage of total 1 74.75128505246906 29.967963117114355 2 7.77804118770591 6.236469413815596 3 3.5822627966518215 4.3084123285848515 4 2.4718512861247146 3.9638835972696302 5 1.9307299815843801 3.870170582125428 6 1.6412581521378127 3.9479051417836177 7 1.3646085215182844 3.8295229934065733 8 1.1701790899849458 3.7530200353850915 9 1.0377543398719604 3.744343041604065 >10 4.209703699215848 23.748677830703187 >50 0.03993697981094961 1.1008656917680057 >100 0.015732749622495303 1.2735885592291825 >500 6.051057547113577E-4 0.14506780160362878 >1k 0.003630634528268146 2.5377161748755195 >5k 0.002420423018845431 7.572393690731226 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTC 8456 2.0291218336964767 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGC 8213 1.9708109768388316 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCG 8200 1.9676914659781348 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6346 1.5228012247679563 No Hit GCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC 2808 0.6738143459105612 TruSeq Adapter, Index 16 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCACTGT 1808 0.43385197201078873 No Hit GAACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT 1772 0.42521332655039684 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTA 1537 0.36882216868395035 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCT 1453 0.34866532927636945 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTC 1083 0.25987925093345365 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT 598 0.14349749959206398 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATG 457 0.10966280487219604 No Hit CCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGC 453 0.10870295537659695 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT 421 0.10102415941180423 TruSeq Adapter, Index 13 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10414367027250127 0.0 2 0.0 0.0 0.0 1.0124012554831403 0.0 3 0.0 0.0 0.0 1.2286073543668352 0.0 4 0.0 0.0 0.0 1.9098605338682895 0.0 5 0.0 0.0 0.0 4.590480212702648 0.0 6 0.0 0.0 0.0 5.1627904744536055 0.0 7 0.0 0.0 0.0 5.910993156273096 0.0 8 0.0 0.0 0.0 6.700229404029448 0.0 9 0.0 0.0 0.0 6.98314504285728 0.0 10 0.0 0.0 0.0 9.518347523108377 0.0 11 0.0 0.0 0.0 10.188562433410441 0.0 12 0.0 0.0 0.0 12.778716297284586 0.0 13 0.0 0.0 0.0 13.158576735167925 0.0 14 0.0 0.0 0.0 13.353426182774541 0.0 15 0.0 0.0 0.0 13.906539454613517 0.0 16 0.0 0.0 0.0 14.325753721816419 0.0 17 0.0 0.0 0.0 14.787681291573481 0.0 18 0.0 0.0 0.0 15.216734016106274 0.0 19 0.0 0.0 0.0 15.961337262317269 0.0 20 0.0 0.0 0.0 16.326080070644924 0.0 21 0.0 0.0 0.0 16.645709952679418 0.0 22 0.0 0.0 0.0 17.03588877264045 0.0 23 0.0 0.0 0.0 17.356478504170546 0.0 24 0.0 0.0 0.0 17.6168376798518 0.0 25 0.0 0.0 0.0 17.85751994087327 0.0 26 0.0 0.0 0.0 18.104921148363935 0.0 27 0.0 0.0 0.0 18.383037539713772 0.0 28 0.0 0.0 0.0 18.622040064117947 0.0 29 0.0 0.0 0.0 18.86056266377432 0.0 30 0.0 0.0 0.0 19.151637023314745 0.0 31 0.0 0.0 0.0 19.401197892170508 0.0 32 0.0 0.0 0.0 19.68531334286784 0.0 33 0.0 0.0 0.0 19.9370338730887 0.0 34 0.0 0.0 0.0 20.193553650787557 0.0 35 0.0 0.0 0.0 20.451273240355913 0.0 36 0.0 0.0 0.0 20.69387520036858 0.0 37 0.0 0.0 0.0 20.955434187919334 0.0 38 0.0 0.0 0.0 21.23283069214747 0.0 39 0.0 0.0 0.0 21.532303734774388 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAT 30 2.1621581E-6 45.000004 14 CGTGGCA 20 7.0281053E-4 45.0 15 GCGAACC 20 7.0281053E-4 45.0 33 CCGGACT 20 7.0281053E-4 45.0 38 CCGTCGA 20 7.0281053E-4 45.0 41 CGTTTTT 4605 0.0 43.72964 1 TGATACC 1005 0.0 42.089554 4 CCGATGA 520 0.0 41.971153 18 ATACCTG 1020 0.0 41.691177 6 CGATGAA 525 0.0 41.57143 19 GATACCT 1025 0.0 41.26829 5 GCGAGAC 225 0.0 41.0 21 TACGGCT 1000 0.0 40.725 7 ACGGCTG 1005 0.0 40.52239 8 CAACGAG 100 0.0 40.5 14 AACGAGC 100 0.0 40.5 15 CGGCTGT 1025 0.0 39.951218 9 CGAGGGA 130 0.0 39.80769 4 ACACGAC 240 0.0 39.375004 26 CGGGATC 40 3.4511504E-7 39.375 6 >>END_MODULE