SRR3552281_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552281_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	646735
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11380	1.7596078764872785	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC	4686	0.7245626106519673	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG	4562	0.7053893789573783	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC	4319	0.6678160297494338	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	1835	0.28373290451266747	No Hit
GAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT	814	0.1258629887048018	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT	779	0.12045118943616784	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGACG	25	3.8889062E-5	45.000004	1
CTTCGCA	20	7.030996E-4	45.0	30
AACGACC	20	7.030996E-4	45.0	40
CGTTTTT	6285	0.0	43.31742	1
TTTACGG	90	0.0	42.500004	2
GACCTAT	55	6.002665E-11	40.909092	33
AAACACG	215	0.0	39.76744	40
CACGACC	225	0.0	39.000004	27
GTTTACG	35	6.244052E-6	38.571426	1
GAAACGT	35	6.244052E-6	38.571426	31
CGAAAGG	100	0.0	38.250004	2
ATTGCGG	65	9.094947E-12	38.07692	2
AACACGT	215	0.0	37.67442	41
CGTCCCG	30	1.1393698E-4	37.500004	41
ATCGAGT	30	1.1393698E-4	37.500004	23
TCAAACG	30	1.1393698E-4	37.500004	1
CACGTGA	230	0.0	37.173912	43
TACGAAT	55	2.744855E-9	36.81818	12
CGAATAT	55	2.744855E-9	36.81818	14
GTACGAG	55	2.744855E-9	36.81818	1