SRR3552279_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552279_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	466930
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCG	10235	2.19197738419035	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTC	9855	2.11059473582764	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGC	9607	2.0574818495277665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5496	1.1770500931617158	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	3058	0.6549161544557	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCT	1714	0.36707857708864283	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCT	1411	0.30218662326258755	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTC	1378	0.29511918274687854	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGATCATCGTA	1024	0.21930482085109115	No Hit
CTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGCT	528	0.11307904825134389	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGATCATCGTATGCCGTCTTCTGC	495	0.10601160773563488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGGTAC	20	7.0289784E-4	45.0	25
ACGATTG	25	3.8872357E-5	45.0	1
TGATTCG	20	7.0289784E-4	45.0	15
TACGGCT	1135	0.0	43.414097	7
ACGGCTG	1150	0.0	42.847824	8
CGTTTTT	2885	0.0	42.114388	1
CTACGAA	70	0.0	41.785713	11
CGAATAT	65	0.0	41.53846	14
CGAATGG	55	6.002665E-11	40.909092	2
GAATCTG	1390	0.0	40.791367	1
GATACCT	1250	0.0	40.5	5
ATGATAC	3150	0.0	40.5	3
CCTCGAT	50	1.0786607E-9	40.5	15
TGATACC	1260	0.0	40.357143	4
TATGCGG	45	1.924127E-8	40.000004	2
AATGATA	3185	0.0	39.91366	2
ATACGGC	1885	0.0	39.867374	6
GAATGAT	3265	0.0	39.62481	1
CGGACGG	40	3.4523327E-7	39.375	2
AATGACT	250	0.0	38.7	2