SRR3552275_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552275_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	434187
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5681	1.3084224078565225	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG	4610	1.0617544974861064	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC	3972	0.9148132026062503	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC	3907	0.8998426945072054	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1921	0.4424360932040803	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT	852	0.19622881385209598	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	810	0.18655556246502084	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGGTCTTCGTATGCCGTCTTC	742	0.1708941078383277	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	556	0.12805542312413776	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTC	526	0.12114595784765551	No Hit
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	500	0.11515775460803755	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	482	0.1110120754421482	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTA	449	0.10341166363801771	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGG	20	7.02843E-4	45.000004	24
ACGTTAC	20	7.02843E-4	45.000004	29
CGGTTAG	20	7.02843E-4	45.000004	32
ATACGCG	25	3.8867824E-5	45.0	1
ATACGAG	25	3.8867824E-5	45.0	1
CGTTTTT	3075	0.0	42.80488	1
TACGAGG	60	3.6379788E-12	41.250004	2
GCGTAAG	55	6.002665E-11	40.909092	1
TACGGCT	600	0.0	40.875	7
ACACGAC	155	0.0	40.64516	26
CGTAAGG	100	0.0	40.5	2
CGGTAGT	45	1.9235813E-8	40.0	12
TTAACGG	40	3.451587E-7	39.375004	2
ACGTAAG	40	3.451587E-7	39.375004	1
CACGACC	155	0.0	39.193546	27
GTCAAGC	155	0.0	39.193546	16
ACGACCA	155	0.0	39.193546	28
GGCGATA	110	0.0	38.86364	8
AGGGTAA	70	0.0	38.571426	6
TTGCACG	70	0.0	38.571426	1