##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552275_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 434187 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.055879148846003 30.0 28.0 31.0 16.0 33.0 2 28.613102188688284 31.0 28.0 33.0 16.0 34.0 3 28.32201102290027 31.0 27.0 33.0 16.0 34.0 4 32.55332379827125 35.0 32.0 35.0 28.0 37.0 5 33.45246633363044 35.0 33.0 35.0 28.0 37.0 6 33.30414084254019 35.0 33.0 35.0 28.0 37.0 7 34.15656848316509 35.0 33.0 36.0 31.0 37.0 8 34.27903184572546 35.0 35.0 37.0 31.0 37.0 9 35.557923198990295 37.0 34.0 39.0 30.0 39.0 10 35.46762800360214 37.0 34.0 39.0 30.0 39.0 11 35.70559689718946 37.0 35.0 39.0 31.0 39.0 12 35.63587117992939 37.0 35.0 39.0 30.0 39.0 13 35.715634047081096 37.0 35.0 39.0 30.0 39.0 14 36.76893366222388 38.0 36.0 40.0 31.0 41.0 15 36.927832938342235 39.0 35.0 40.0 31.0 41.0 16 36.69206586102302 38.0 35.0 40.0 31.0 41.0 17 35.76034289373012 38.0 34.0 40.0 29.0 41.0 18 35.520211337511256 38.0 33.0 39.0 29.0 41.0 19 34.99905800956731 37.0 33.0 39.0 27.0 40.0 20 35.5739923120683 37.0 34.0 39.0 30.0 40.0 21 35.93279854072093 38.0 34.0 39.0 30.0 40.0 22 36.35412852066045 38.0 35.0 40.0 31.0 41.0 23 36.553655452604524 38.0 35.0 40.0 31.0 41.0 24 36.4928452487062 38.0 35.0 40.0 31.0 41.0 25 35.790885033407264 38.0 34.0 40.0 29.0 41.0 26 35.967417264911205 38.0 35.0 40.0 30.0 41.0 27 36.214230274052426 38.0 35.0 40.0 30.0 41.0 28 36.202120284577845 38.0 35.0 40.0 30.0 41.0 29 36.16990144799361 38.0 35.0 40.0 30.0 41.0 30 35.46546073466041 38.0 34.0 40.0 27.0 41.0 31 35.67385942001948 38.0 35.0 40.0 29.0 41.0 32 35.54495413266634 38.0 34.0 40.0 29.0 41.0 33 35.2362714682844 38.0 34.0 40.0 25.0 41.0 34 35.2268423513371 38.0 34.0 40.0 26.0 41.0 35 34.767812025694 38.0 34.0 40.0 23.0 41.0 36 34.630944731187256 38.0 34.0 40.0 23.0 41.0 37 34.57461416394319 38.0 34.0 40.0 23.0 41.0 38 34.27157653269214 38.0 33.0 40.0 21.0 41.0 39 34.2198499724773 37.0 33.0 40.0 22.0 41.0 40 33.94344142040181 37.0 33.0 40.0 20.0 41.0 41 33.892527873934505 37.0 33.0 40.0 20.0 41.0 42 33.89850456139866 37.0 33.0 40.0 20.0 41.0 43 33.77581779279435 37.0 33.0 40.0 20.0 41.0 44 33.70049080235014 37.0 33.0 40.0 20.0 41.0 45 33.59788524299438 37.0 33.0 40.0 20.0 41.0 46 33.329692045132624 36.0 33.0 40.0 18.0 41.0 47 33.347136141800654 36.0 33.0 40.0 19.0 41.0 48 33.240007185843886 36.0 33.0 39.0 18.0 40.0 49 33.209296915845016 36.0 32.0 39.0 18.0 40.0 50 33.05820994179927 35.0 32.0 39.0 18.0 40.0 51 30.314576438262776 34.0 27.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 31.0 10 30.0 11 40.0 12 30.0 13 30.0 14 48.0 15 101.0 16 139.0 17 276.0 18 541.0 19 803.0 20 1257.0 21 1890.0 22 2690.0 23 3757.0 24 5011.0 25 7226.0 26 9446.0 27 10524.0 28 10833.0 29 11654.0 30 13271.0 31 16489.0 32 21369.0 33 29135.0 34 38907.0 35 42983.0 36 55189.0 37 69539.0 38 65782.0 39 15158.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17672799968677 19.102598649890485 21.865233182937306 17.85544016748544 2 34.890266175634 25.671427288242164 22.668343363573758 16.769963172550074 3 29.819409609223673 24.230343147077182 30.575996056998484 15.374251186700661 4 26.771874791276566 22.30168107290177 32.94847611743327 17.977968018388392 5 26.554687266085814 25.81353195742848 28.146628065787322 19.485152710698387 6 23.946594439722976 33.300398215515436 28.639733571018937 14.113273773742648 7 72.6689191523468 5.075693192103863 17.79026087837729 4.465126777172048 8 72.51299555260752 7.467980386331235 15.03292360204244 4.98610045901881 9 66.83894266756029 6.140441791209779 16.252674538850773 10.76794100237916 10 38.826127912627506 21.923963637787406 23.600890860389647 15.649017589195438 11 29.999055706412214 21.458495993661717 29.255597242662724 19.286851057263345 12 25.84462455117265 20.004053552962205 33.89253938970997 20.258782506155182 13 23.12713185793218 21.658870486679703 36.87167050141989 18.34232715396822 14 21.194554420100093 24.59999953936898 32.88237556628826 21.323070474242662 15 19.537434331290434 21.767579407029693 38.9263151591365 19.768671102543376 16 22.54673677470767 22.715558042963053 32.62925882165979 22.108446360669483 17 22.499522095318376 21.812951562345255 33.12190369587298 22.56562264646339 18 23.277067254431845 21.81986102762174 33.72302717492693 21.180044543019484 19 22.7950168936426 24.038490327900192 31.20683023674131 21.959662541715897 20 24.43463300375184 23.383703335198888 33.33333333333333 18.84833032771594 21 24.285158238270608 25.53577145331389 31.640053709576748 18.53901659883875 22 22.934127461209112 21.133520810157837 31.450964676510353 24.481387052122702 23 22.02000520513051 25.435123575786474 32.06245235347903 20.48241886560399 24 23.653172480981695 21.399765538811618 31.685886495910747 23.261175484295936 25 21.840128792432754 25.29117638252642 31.223643268914085 21.645051556126738 26 21.57756911192643 22.77037313415648 31.712833410489026 23.939224343428062 27 22.2376533613397 23.683574128198217 30.966841476138164 23.11193103432392 28 20.571320652161397 23.5944420261316 33.52541646801954 22.308820853687468 29 25.354973778579275 22.050637167856245 30.43389138781216 22.160497665752313 30 22.730758866571314 23.088208536874667 34.445987558356194 19.735045038197825 31 26.620096870703176 22.32724609442475 29.766206726594763 21.28645030827731 32 26.455881912632112 23.345010329650588 29.709779426836825 20.489328330880475 33 23.117458606545107 21.68719929431328 31.48850610451257 23.706835994629042 34 24.650899266905736 22.41776008954667 32.24325002821365 20.688090615333945 35 22.312966532853356 22.59072703696794 31.347783328381553 23.748523101797154 36 25.790039775488445 24.285388553779825 30.567013752139054 19.35755791859268 37 24.439469629445377 23.90053133787976 31.31784231218346 20.3421567204914 38 23.94636412421376 25.23958570846202 28.57985153862276 22.234198628701456 39 25.225766777909058 22.44724047472633 30.832567534265188 21.494425213099426 40 24.04194506053843 22.073208087759422 31.360450681388436 22.52439617031371 41 21.007768542125856 23.70983009624885 31.3470923818539 23.93530897977139 42 22.360872158770302 22.618134582564657 31.326824617042888 23.694168641622156 43 24.19809897578693 21.806963359105637 30.123886712407327 23.871050952700106 44 23.038690702393207 22.308129907159817 30.584287415330262 24.068891975116713 45 22.826570118405204 21.627777892935534 30.02807546057344 25.517576528085822 46 24.91990778167011 23.742534898557537 29.28047131765806 22.057086002114296 47 21.1802748585287 22.732601390645044 34.176979043591814 21.91014470723444 48 22.75701483462195 23.68449539023508 30.09026064806178 23.468229127081187 49 22.14506652663484 21.90162303339345 33.626064345546965 22.32724609442475 50 22.10199752641143 21.857632771133176 31.95904068984101 24.08132901261438 51 21.975554311851806 21.471854293196248 29.70125775299583 26.851333641956117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 190.0 1 488.5 2 787.0 3 5621.5 4 10456.0 5 7252.5 6 4049.0 7 3662.0 8 3275.0 9 3157.0 10 3039.0 11 2926.0 12 2813.0 13 2792.0 14 2771.0 15 2657.5 16 2544.0 17 2395.5 18 2247.0 19 2081.0 20 1915.0 21 1894.5 22 1874.0 23 1848.5 24 1823.0 25 2097.0 26 2491.0 27 2611.0 28 3248.5 29 3886.0 30 4314.0 31 4742.0 32 5371.0 33 6000.0 34 7259.0 35 8518.0 36 8802.5 37 9087.0 38 10364.0 39 11641.0 40 13276.5 41 14912.0 42 16294.5 43 17677.0 44 20390.5 45 23104.0 46 32893.5 47 42683.0 48 38998.5 49 35314.0 50 35610.0 51 35906.0 52 33105.5 53 30305.0 54 28195.5 55 26086.0 56 24592.0 57 23098.0 58 22417.0 59 21736.0 60 20524.0 61 19312.0 62 17866.0 63 16420.0 64 14596.5 65 12773.0 66 11266.0 67 9759.0 68 8289.5 69 6820.0 70 5706.5 71 4593.0 72 3701.0 73 2809.0 74 2372.0 75 1492.0 76 1049.0 77 826.5 78 604.0 79 446.5 80 289.0 81 223.5 82 158.0 83 127.0 84 96.0 85 72.5 86 49.0 87 35.5 88 22.0 89 20.0 90 18.0 91 16.0 92 14.0 93 8.5 94 3.0 95 3.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 434187.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.50654247805488 #Duplication Level Percentage of deduplicated Percentage of total 1 76.42005372765004 27.898319375836927 2 6.8995705405620456 5.037589300387289 3 2.629841406164943 2.880192510141242 4 1.7265089483040335 2.521154890400122 5 1.3540209638825158 2.471531191707694 6 1.1601405432829517 2.541163201432365 7 1.0339472919640165 2.6422088513907926 8 0.9534907992172622 2.7846921891247587 9 0.8897077278603261 2.9232137664168025 >10 6.8633886679659195 40.263851348750684 >50 0.04172601763414239 1.0545733628313827 >100 0.021183978183487676 1.4562486392520473 >500 0.003209693664164799 0.8169428317400446 >1k 0.002567754931331839 3.376978257422272 >5k 6.419387328329598E-4 1.3313402831655745 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5681 1.3084224078565225 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG 4610 1.0617544974861064 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC 3972 0.9148132026062503 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC 3907 0.8998426945072054 No Hit GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC 1921 0.4424360932040803 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT 852 0.19622881385209598 No Hit GAACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT 810 0.18655556246502084 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGGGTCTTCGTATGCCGTCTTC 742 0.1708941078383277 No Hit CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC 556 0.12805542312413776 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTC 526 0.12114595784765551 No Hit CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT 500 0.11515775460803755 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 482 0.1110120754421482 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTA 449 0.10341166363801771 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15039602751809705 0.0 2 0.0 0.0 0.0 1.030201272723504 0.0 3 0.0 0.0 0.0 1.2621289905040916 0.0 4 0.0 0.0 0.0 1.7229903244454579 0.0 5 0.0 0.0 0.0 3.7822412923463853 0.0 6 0.0 0.0 0.0 4.300451188082555 0.0 7 0.0 0.0 0.0 4.982185095362136 0.0 8 0.0 0.0 0.0 5.80349020122666 0.0 9 0.0 0.0 0.0 6.097142475477156 0.0 10 0.0 0.0 0.0 8.056436512378307 0.0 11 0.0 0.0 0.0 8.890639286758931 0.0 12 0.0 0.0 0.0 10.795348547975872 0.0 13 0.0 0.0 0.0 11.15464074235295 0.0 14 0.0 0.0 0.0 11.304115507834181 0.0 15 0.0 0.0 0.0 11.651891926750455 0.0 16 0.0 0.0 0.0 12.116207993330063 0.0 17 0.0 0.0 0.0 12.625435584206805 0.0 18 0.0 0.0 0.0 13.18671448016638 0.0 19 0.0 0.0 0.0 13.519290075474393 0.0 20 0.0 0.0 0.0 13.832058536989823 0.0 21 0.0 0.0 0.0 14.209545656594969 0.0 22 0.0 0.0 0.0 14.56975911300891 0.0 23 0.0 0.0 0.0 14.935500141644038 0.0 24 0.0 0.0 0.0 15.23237683302356 0.0 25 0.0 0.0 0.0 15.501155032278719 0.0 26 0.0 0.0 0.0 15.737228429225196 0.0 27 0.0 0.0 0.0 15.996333377093281 0.0 28 0.0 0.0 0.0 16.259353688618038 0.0 29 0.0 0.0 0.0 16.52030116055985 0.0 30 0.0 0.0 0.0 16.84182161142549 0.0 31 0.0 0.0 0.0 17.11889116901243 0.0 32 0.0 0.0 0.0 17.3835236891017 0.0 33 0.0 0.0 0.0 17.666120818909825 0.0 34 0.0 0.0 0.0 17.93812343529401 0.0 35 0.0 0.0 0.0 18.226017821814104 0.0 36 0.0 0.0 0.0 18.48489245417297 0.0 37 0.0 0.0 0.0 18.761040749723044 0.0 38 0.0 0.0 0.0 19.046631981150977 0.0 39 0.0 0.0 0.0 19.365388645906027 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGG 20 7.02843E-4 45.000004 24 ACGTTAC 20 7.02843E-4 45.000004 29 CGGTTAG 20 7.02843E-4 45.000004 32 ATACGCG 25 3.8867824E-5 45.0 1 ATACGAG 25 3.8867824E-5 45.0 1 CGTTTTT 3075 0.0 42.80488 1 TACGAGG 60 3.6379788E-12 41.250004 2 GCGTAAG 55 6.002665E-11 40.909092 1 TACGGCT 600 0.0 40.875 7 ACACGAC 155 0.0 40.64516 26 CGTAAGG 100 0.0 40.5 2 CGGTAGT 45 1.9235813E-8 40.0 12 TTAACGG 40 3.451587E-7 39.375004 2 ACGTAAG 40 3.451587E-7 39.375004 1 CACGACC 155 0.0 39.193546 27 GTCAAGC 155 0.0 39.193546 16 ACGACCA 155 0.0 39.193546 28 GGCGATA 110 0.0 38.86364 8 AGGGTAA 70 0.0 38.571426 6 TTGCACG 70 0.0 38.571426 1 >>END_MODULE