SRR3552273_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552273_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	619975
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15080	2.4323561433928784	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC	8162	1.3165046977700714	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG	4104	0.6619621758941893	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC	3027	0.4882454937699101	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	2403	0.3875962740433082	No Hit
GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1987	0.3204967942255736	No Hit
TAGTGAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT	1465	0.2362998508004355	No Hit
TAGTGAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTAT	1172	0.1890398806403484	No Hit
TAGTGAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGT	1166	0.1880720996814388	No Hit
TAGTGAATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC	997	0.1608129360054841	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT	812	0.1309730231057704	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCT	792	0.12774708657607162	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	787	0.1269406024436469	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTC	785	0.12661800879067703	No Hit
TAGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	783	0.12629541513770717	No Hit
TCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	705	0.11371426267188192	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT	639	0.10306867212387595	No Hit
TAGTGAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTC	624	0.10064921972660187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	45	3.8380676E-10	45.000004	2
CGGTCTA	20	7.03077E-4	45.0	31
ACATACG	20	7.03077E-4	45.0	17
CGTTTTT	9390	0.0	43.753994	1
TAGTGAA	925	0.0	42.324326	1
AGTGAAT	890	0.0	41.207867	2
TTAACGG	50	1.0804797E-9	40.500004	2
TCAAGCG	245	0.0	39.489796	17
ACACGAC	245	0.0	38.57143	26
GTTAACG	35	6.243634E-6	38.571426	1
TCGTAAC	35	6.243634E-6	38.571426	34
TCGAAGG	35	6.243634E-6	38.571426	2
ACGGGCT	95	0.0	37.894737	5
CACGACC	250	0.0	37.8	27
CGTTCTG	125	0.0	37.8	1
AGACACG	245	0.0	37.65306	24
ATTACGG	30	1.1393153E-4	37.500004	2
CGTTCAA	30	1.1393153E-4	37.500004	9
TTGGTAG	30	1.1393153E-4	37.500004	1
GCGTAAG	30	1.1393153E-4	37.500004	1