##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552273_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 619975 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.982568651961774 30.0 26.0 31.0 16.0 33.0 2 28.578628170490745 31.0 28.0 33.0 16.0 33.0 3 28.182134763498528 31.0 27.0 33.0 16.0 34.0 4 31.689890721400058 35.0 30.0 35.0 19.0 37.0 5 33.12929714907859 35.0 32.0 35.0 28.0 37.0 6 33.159482237186985 35.0 33.0 35.0 28.0 37.0 7 34.012474696560346 35.0 33.0 36.0 30.0 37.0 8 34.29661518609621 35.0 35.0 37.0 31.0 37.0 9 35.57528287430945 37.0 35.0 39.0 30.0 39.0 10 35.527203516270816 37.0 35.0 39.0 30.0 39.0 11 35.80072260978265 37.0 35.0 39.0 31.0 39.0 12 35.734273156175654 37.0 35.0 39.0 30.0 39.0 13 35.892982781563774 37.0 35.0 39.0 31.0 39.0 14 36.92082745271987 38.0 36.0 40.0 31.0 41.0 15 37.10778660429856 39.0 36.0 40.0 32.0 41.0 16 36.83625307472075 38.0 35.0 40.0 31.0 41.0 17 36.00166619621759 38.0 34.0 40.0 29.0 41.0 18 35.69461026654301 38.0 34.0 39.0 29.0 40.0 19 35.10200250010081 37.0 33.0 39.0 27.0 40.0 20 35.43369329408444 37.0 34.0 39.0 30.0 40.0 21 35.65670551231904 37.0 34.0 39.0 30.0 40.0 22 36.08141134723174 38.0 35.0 40.0 31.0 41.0 23 36.286672849711685 38.0 35.0 40.0 31.0 41.0 24 36.179562079116096 38.0 35.0 40.0 31.0 41.0 25 35.488356788580184 37.0 34.0 40.0 29.0 41.0 26 35.658734626396225 37.0 34.0 40.0 30.0 41.0 27 35.95424009032622 38.0 35.0 40.0 30.0 41.0 28 35.872840033872336 38.0 35.0 40.0 30.0 41.0 29 35.88291624662285 38.0 35.0 40.0 30.0 41.0 30 35.30156377273277 38.0 34.0 40.0 27.0 41.0 31 35.330824630025404 38.0 34.0 40.0 27.0 41.0 32 34.949360861325054 38.0 34.0 40.0 25.0 41.0 33 34.54931408524537 38.0 34.0 40.0 22.0 41.0 34 34.13982660591153 38.0 33.0 40.0 20.0 41.0 35 33.73121658131376 38.0 33.0 40.0 16.0 41.0 36 33.374639299971776 37.0 33.0 40.0 15.0 41.0 37 33.284156619218514 37.0 33.0 40.0 15.0 41.0 38 33.14081535545788 37.0 33.0 40.0 13.0 41.0 39 32.930458486229284 37.0 32.0 40.0 12.0 41.0 40 32.828906004274366 37.0 32.0 40.0 11.0 41.0 41 32.7118045082463 37.0 32.0 40.0 10.0 41.0 42 32.657591031896445 37.0 32.0 40.0 10.0 41.0 43 32.573176337755555 36.0 32.0 40.0 10.0 41.0 44 32.48045485705069 36.0 31.0 40.0 10.0 41.0 45 32.46579297552321 36.0 31.0 40.0 10.0 41.0 46 32.24314851405298 36.0 31.0 40.0 10.0 40.0 47 32.23775797411186 36.0 31.0 39.0 10.0 40.0 48 32.1827234969152 36.0 31.0 39.0 10.0 40.0 49 32.11166095407073 35.0 31.0 39.0 10.0 40.0 50 31.950620589539902 35.0 31.0 39.0 10.0 40.0 51 29.57863623533207 34.0 25.0 37.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 13.0 9 33.0 10 45.0 11 50.0 12 36.0 13 48.0 14 73.0 15 156.0 16 327.0 17 595.0 18 1006.0 19 1640.0 20 2435.0 21 3320.0 22 4832.0 23 6749.0 24 10105.0 25 14806.0 26 19237.0 27 20076.0 28 18826.0 29 18304.0 30 19702.0 31 22936.0 32 29428.0 33 39315.0 34 50823.0 35 61404.0 36 75189.0 37 93416.0 38 85228.0 39 19819.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.72519053187629 17.379087866446227 20.470180249203594 25.42554135247389 2 41.097947497882984 23.454332836001452 20.57873301342796 14.868986652687607 3 29.859429815718375 20.82438808016452 35.04028388241461 14.275898221702487 4 24.258720109681843 20.742933182789628 38.5649421347635 16.43340457276503 5 23.991451268196297 23.648695511915804 34.59381426670431 17.766038953183596 6 21.736360337110366 30.241380700834714 34.921892011774666 13.100366950280254 7 65.94798177345861 6.167345457478124 23.69272954554619 4.191943223517077 8 65.82636396628897 5.431831928706803 23.701439574176376 5.040364530827856 9 61.641840396790194 5.45231662567039 24.19662083148514 8.709222146054277 10 33.87055929674584 21.01858945925239 30.3925158272511 14.718335416750675 11 25.82120246784145 21.455703859026574 35.70450421387959 17.01858945925239 12 22.799951610952053 19.88370498810436 39.485140529860075 17.831202871083512 13 20.904230009274567 19.51756119198355 41.527964837291826 18.050243961450057 14 19.23480785515545 22.087180934715107 39.33126335739344 19.346747852735998 15 18.46348643090447 21.394733658615266 42.87495463526756 17.26682527521271 16 21.397959595144968 21.46086535747409 38.035888543892895 19.105286503488045 17 21.098270091535948 21.43796120811323 38.31638372515021 19.147384975200612 18 21.777168434211056 21.837493447316426 37.514415903867096 18.87092221460543 19 21.21924271139965 23.300939554014274 36.100004032420664 19.37981370216541 20 22.159280616153875 23.374813500544377 36.59615307068834 17.869752812613413 21 21.491027864026776 23.94354611073027 37.133755393362634 17.431670631880316 22 20.940199201580707 20.48856808742288 37.36811968224526 21.203113028751158 23 20.677124077583773 22.912052905359086 37.70119762893665 18.709625388120486 24 21.35311907738215 21.24682446872858 37.351022218637844 20.049034235251423 25 20.891326263155772 23.769345538126537 35.050445582483164 20.288882616234524 26 20.125488931005282 21.38602362998508 36.231138352352914 22.25734908665672 27 21.97088592281947 21.59425783297714 35.671599661276666 20.763256582926733 28 20.01693616678092 22.128472922295252 36.21694423162224 21.637646679301582 29 22.198153151336747 22.632364208234204 33.75507076898262 21.41441187144643 30 23.537723295294168 21.225855881285536 35.23400137102303 20.002419452397273 31 24.590507681761363 21.622968668091456 33.0998830598008 20.686640590346386 32 23.079640308076936 24.717125690552038 33.08972135973225 19.113512641638774 33 22.113149723779184 24.896165167950322 31.562401709746364 21.428283398524133 34 21.417476511149644 25.228759224162268 32.599056413565066 20.75470785112303 35 21.612484374369934 27.799346747852738 29.852010161700072 20.73615871607726 36 22.254123150127022 29.55780475019154 28.777450703657404 19.410621396024034 37 22.090245574418326 28.062744465502643 29.47505947820477 20.37195048187427 38 21.942820275011087 28.412435985321988 28.61566998669301 21.029073752973908 39 22.603008185813945 26.174119924190492 29.384410661720228 21.83846122827533 40 22.636719222549296 26.426710754465905 31.45659099157224 19.479979031412554 41 19.99274164280818 27.613371506915602 30.330900439533853 22.06298641074237 42 21.828944715512723 26.177829751199646 31.162546876890197 20.830678656397435 43 22.9783459010444 24.927295455461916 30.20637928948748 21.88797935400621 44 22.226057502318643 24.415823218678174 30.933666680108068 22.424452598895115 45 21.58877374087665 23.7354732045647 30.34686882535586 24.328884229202792 46 22.935602242025887 24.621315375619986 30.82721077462801 21.615871607726117 47 20.739384652606958 24.237267631759345 33.77797491834348 21.245372797290212 48 21.567805153433607 24.17178112020646 31.385942981571834 22.8744707447881 49 21.007621275051413 23.26029275374007 33.669260857292635 22.062825113915885 50 20.7250292350498 23.54304609056817 33.420541150852856 22.311383523529173 51 20.374692527924513 22.4278398322513 32.717448284205005 24.480019355619177 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 136.0 1 527.0 2 918.0 3 13725.0 4 26532.0 5 18853.0 6 11174.0 7 10262.5 8 9351.0 9 8985.5 10 8620.0 11 8382.0 12 8144.0 13 7659.0 14 7174.0 15 6655.0 16 6136.0 17 5843.0 18 5550.0 19 5109.0 20 4668.0 21 4389.0 22 4110.0 23 4044.5 24 3979.0 25 4139.0 26 4601.5 27 4904.0 28 5532.0 29 6160.0 30 6853.0 31 7546.0 32 8493.5 33 9441.0 34 10859.0 35 12277.0 36 13288.5 37 14300.0 38 15738.0 39 17176.0 40 18696.0 41 20216.0 42 21681.5 43 23147.0 44 26702.5 45 30258.0 46 44681.0 47 59104.0 48 50956.0 49 42808.0 50 43496.5 51 44185.0 52 40746.0 53 37307.0 54 35488.5 55 33670.0 56 31865.5 57 30061.0 58 28753.5 59 27446.0 60 26381.0 61 25316.0 62 23419.5 63 21523.0 64 19166.0 65 16809.0 66 14337.0 67 11865.0 68 9937.5 69 8010.0 70 6850.5 71 5691.0 72 4814.5 73 3938.0 74 3284.0 75 2067.0 76 1504.0 77 1193.5 78 883.0 79 662.0 80 441.0 81 357.0 82 273.0 83 198.5 84 124.0 85 97.0 86 70.0 87 56.0 88 42.0 89 37.5 90 33.0 91 24.0 92 15.0 93 9.0 94 3.0 95 4.5 96 6.0 97 3.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 619975.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.157308170373014 #Duplication Level Percentage of deduplicated Percentage of total 1 73.28040102393916 32.358652508626 2 8.560617908317605 7.560276862127892 3 4.679495554837349 6.199017818905303 4 3.2239816407578816 5.694494033862823 5 2.417117293329032 5.336669660273398 6 1.8455168853525181 4.8895834704082874 7 1.4061065816857705 4.346291715352184 8 1.0680212905107802 3.7728756206083207 9 0.8420874688361507 3.3465884281026557 >10 2.6030985024789355 15.680440045794539 >50 0.04405883445144092 1.3433977151510899 >100 0.022029416641733923 1.7747094636568292 >500 0.004107179373882585 1.3384514516876733 >1k 0.002613659601561645 2.526537330088927 >5k 3.7337994308023496E-4 1.3457059311006148 >10k+ 3.7337994308023496E-4 2.486307944253525 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15080 2.4323561433928784 No Hit GAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTC 8162 1.3165046977700714 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCG 4104 0.6619621758941893 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC 3027 0.4882454937699101 No Hit GAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 2403 0.3875962740433082 No Hit GCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC 1987 0.3204967942255736 No Hit TAGTGAATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT 1465 0.2362998508004355 No Hit TAGTGAATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTAT 1172 0.1890398806403484 No Hit TAGTGAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGT 1166 0.1880720996814388 No Hit TAGTGAATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGC 997 0.1608129360054841 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 812 0.1309730231057704 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCT 792 0.12774708657607162 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 787 0.1269406024436469 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTC 785 0.12661800879067703 No Hit TAGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 783 0.12629541513770717 No Hit TCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC 705 0.11371426267188192 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 639 0.10306867212387595 No Hit TAGTGAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTC 624 0.10064921972660187 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.612968264849389E-4 0.0 0.0 0.09322956570829469 0.0 2 1.612968264849389E-4 0.0 0.0 0.7176095810314932 0.0 3 1.612968264849389E-4 0.0 0.0 0.9776200653252147 0.0 4 1.612968264849389E-4 0.0 0.0 1.7879753215855478 0.0 5 1.612968264849389E-4 0.0 0.0 3.896770031049639 0.0 6 1.612968264849389E-4 0.0 0.0 4.948909230210895 0.0 7 1.612968264849389E-4 0.0 0.0 5.780394370740756 0.0 8 1.612968264849389E-4 0.0 0.0 6.932698899149159 0.0 9 1.612968264849389E-4 0.0 0.0 7.835154643332393 0.0 10 1.612968264849389E-4 0.0 0.0 9.329247147062382 0.0 11 1.612968264849389E-4 0.0 0.0 9.974434453002138 0.0 12 1.612968264849389E-4 0.0 0.0 11.160288721319407 0.0 13 1.612968264849389E-4 0.0 0.0 11.433525545384894 0.0 14 1.612968264849389E-4 0.0 0.0 11.819992741642809 0.0 15 1.612968264849389E-4 0.0 0.0 12.007097060365338 0.0 16 1.612968264849389E-4 0.0 0.0 12.458728174523166 0.0 17 1.612968264849389E-4 0.0 0.0 12.720674220734708 0.0 18 1.612968264849389E-4 0.0 0.0 13.01504092906972 0.0 19 1.612968264849389E-4 0.0 0.0 13.22827533368281 0.0 20 1.612968264849389E-4 0.0 0.0 13.420863744505827 0.0 21 1.612968264849389E-4 0.0 0.0 13.626194604621155 0.0 22 1.612968264849389E-4 0.0 0.0 13.84426791402879 0.0 23 1.612968264849389E-4 0.0 0.0 14.08234202992056 0.0 24 1.612968264849389E-4 0.0 0.0 14.27138191056091 0.0 25 1.612968264849389E-4 0.0 0.0 14.433001330698819 0.0 26 1.612968264849389E-4 0.0 0.0 14.590910923827574 0.0 27 1.612968264849389E-4 0.0 0.0 14.770756885358281 0.0 28 1.612968264849389E-4 0.0 0.0 14.936408726158312 0.0 29 1.612968264849389E-4 0.0 0.0 15.111738376547441 0.0 30 1.612968264849389E-4 0.0 0.0 15.35432880358079 0.0 31 3.225936529698778E-4 0.0 0.0 15.547401104883262 0.0 32 3.225936529698778E-4 0.0 0.0 15.758054760272591 0.0 33 3.225936529698778E-4 0.0 0.0 15.960804871164159 0.0 34 3.225936529698778E-4 0.0 0.0 16.16355498205573 0.0 35 3.225936529698778E-4 0.0 0.0 16.36872454534457 0.0 36 4.838904794548167E-4 0.0 0.0 16.580507278519296 0.0 37 4.838904794548167E-4 0.0 0.0 16.80761321021009 0.0 38 4.838904794548167E-4 0.0 0.0 17.071172224686478 0.0 39 4.838904794548167E-4 0.0 0.0 17.44634864309045 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGG 45 3.8380676E-10 45.000004 2 CGGTCTA 20 7.03077E-4 45.0 31 ACATACG 20 7.03077E-4 45.0 17 CGTTTTT 9390 0.0 43.753994 1 TAGTGAA 925 0.0 42.324326 1 AGTGAAT 890 0.0 41.207867 2 TTAACGG 50 1.0804797E-9 40.500004 2 TCAAGCG 245 0.0 39.489796 17 ACACGAC 245 0.0 38.57143 26 GTTAACG 35 6.243634E-6 38.571426 1 TCGTAAC 35 6.243634E-6 38.571426 34 TCGAAGG 35 6.243634E-6 38.571426 2 ACGGGCT 95 0.0 37.894737 5 CACGACC 250 0.0 37.8 27 CGTTCTG 125 0.0 37.8 1 AGACACG 245 0.0 37.65306 24 ATTACGG 30 1.1393153E-4 37.500004 2 CGTTCAA 30 1.1393153E-4 37.500004 9 TTGGTAG 30 1.1393153E-4 37.500004 1 GCGTAAG 30 1.1393153E-4 37.500004 1 >>END_MODULE