SRR3552271_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552271_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533696
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8048	1.5079745772874444	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC	2853	0.5345739896870128	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	2647	0.49597523683894956	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC	2380	0.44594675620578006	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	1208	0.22634608466242956	TruSeq Adapter, Index 16 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCT	615	0.1152341407842667	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	25	3.8879876E-5	45.0	2
CGTAAGG	40	6.8030204E-9	45.0	2
TACGTTG	25	3.8879876E-5	45.0	1
CGTTTTT	4645	0.0	43.595264	1
TACGGGA	190	0.0	40.26316	4
AGACACG	285	0.0	40.263157	24
ACGTTGG	45	1.9250365E-8	40.0	2
GCGTTAG	45	1.9250365E-8	40.0	1
TCGTACG	45	1.9250365E-8	40.0	30
CACGACC	295	0.0	38.898304	27
ACGACCA	295	0.0	38.898304	28
TCGACGG	35	6.2420004E-6	38.571426	2
TGTCGTG	35	6.2420004E-6	38.571426	27
GCGAGAC	300	0.0	38.250004	21
GACACGA	300	0.0	38.250004	25
CGACGGG	100	0.0	38.25	3
GCGATAT	65	9.094947E-12	38.07692	9
TGCTAGG	160	0.0	37.96875	2
CGAGACA	305	0.0	37.62295	22
CGCATCG	30	1.1391027E-4	37.499996	21