##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552268_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 408540 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.810848386938854 28.0 16.0 30.0 16.0 33.0 2 26.088725706173204 28.0 25.0 31.0 16.0 33.0 3 27.039418416801293 30.0 25.0 31.0 16.0 33.0 4 28.240093993244237 32.0 22.0 35.0 19.0 35.0 5 30.009742008126498 32.0 28.0 35.0 19.0 35.0 6 30.472411514172418 33.0 28.0 35.0 17.0 35.0 7 31.966566309296518 33.0 31.0 35.0 28.0 35.0 8 33.21373672100651 35.0 33.0 35.0 28.0 37.0 9 33.97536593723993 35.0 32.0 37.0 27.0 39.0 10 34.13994957654085 35.0 32.0 39.0 27.0 39.0 11 34.58730356880599 37.0 33.0 39.0 27.0 39.0 12 32.56977284965976 35.0 30.0 37.0 23.0 39.0 13 33.694438733049395 35.0 32.0 37.0 27.0 39.0 14 34.796548685563224 37.0 33.0 39.0 27.0 40.0 15 35.28111323248641 37.0 33.0 39.0 27.0 40.0 16 35.714475938708574 37.0 34.0 39.0 30.0 41.0 17 33.838796690654526 36.0 31.0 39.0 24.0 41.0 18 34.127551769716554 36.0 32.0 39.0 26.0 40.0 19 33.94051990013218 37.0 32.0 39.0 25.0 40.0 20 34.294404464679104 35.0 32.0 39.0 27.0 40.0 21 35.08152690067068 36.0 34.0 39.0 30.0 40.0 22 35.80370832721398 37.0 34.0 39.0 30.0 40.0 23 36.219733685808 38.0 35.0 40.0 31.0 40.0 24 35.97264649728301 38.0 35.0 40.0 31.0 41.0 25 34.82202477113624 36.0 33.0 39.0 27.0 40.0 26 35.126920252606844 37.0 34.0 39.0 27.0 40.0 27 35.78732804621335 37.0 35.0 40.0 30.0 40.0 28 35.686625544622316 38.0 35.0 40.0 30.0 40.0 29 35.82623243746023 38.0 35.0 40.0 30.0 41.0 30 35.36698242522152 37.0 34.0 40.0 29.0 41.0 31 35.122357663876244 37.0 34.0 40.0 27.0 41.0 32 34.75480246732266 37.0 34.0 40.0 25.0 40.0 33 34.61516375385519 38.0 34.0 40.0 23.0 41.0 34 33.20387232584325 36.0 32.0 39.0 19.0 40.0 35 33.231989523669654 36.0 33.0 39.0 18.0 40.0 36 33.007524355020315 36.0 32.0 39.0 16.0 40.0 37 32.93443971214569 36.0 32.0 39.0 15.0 40.0 38 33.03907328535762 37.0 33.0 39.0 15.0 40.0 39 32.514732951485776 36.0 32.0 39.0 15.0 40.0 40 32.61773388162726 36.0 32.0 39.0 15.0 40.0 41 32.44763793019043 36.0 31.0 39.0 13.0 40.0 42 32.58667449943702 36.0 32.0 39.0 13.0 40.0 43 32.62917706956479 36.0 32.0 39.0 12.0 40.0 44 32.230268761932734 36.0 31.0 39.0 12.0 40.0 45 32.416323982963725 36.0 31.0 39.0 12.0 40.0 46 32.08410681940569 35.0 31.0 39.0 11.0 40.0 47 32.22310912028198 36.0 31.0 39.0 12.0 40.0 48 32.261350173789594 36.0 31.0 39.0 12.0 40.0 49 31.903218779066922 35.0 31.0 38.0 12.0 40.0 50 31.89417682479072 35.0 31.0 38.0 12.0 40.0 51 28.927847946345523 33.0 24.0 36.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 13.0 10 33.0 11 32.0 12 37.0 13 30.0 14 61.0 15 104.0 16 182.0 17 372.0 18 700.0 19 1050.0 20 1578.0 21 2304.0 22 3343.0 23 4732.0 24 7145.0 25 10100.0 26 12600.0 27 13257.0 28 12975.0 29 13664.0 30 16668.0 31 21247.0 32 28475.0 33 38079.0 34 52028.0 35 65541.0 36 58473.0 37 34041.0 38 9195.0 39 470.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.772262201987566 15.898565623929114 19.08650315758555 24.24266901649777 2 40.6043471875459 25.044548881382482 20.121163166397416 14.229940764674206 3 27.154501395212222 23.71738385470211 35.116757233073876 14.011357517011799 4 23.359279385127525 20.21833847358888 40.14123464042689 16.28114750085671 5 24.951045185293975 23.184755470700544 33.501248347775004 18.362950996230477 6 20.48098105448671 32.07568414353552 34.50800411220444 12.93533068977334 7 63.08562197092083 4.808586674499437 27.673911979243158 4.431879375336564 8 61.50242326332794 9.077446516864935 23.58594017721643 5.834190042590689 9 55.85964654623782 6.218240563959466 24.938316933470407 12.983795956332306 10 31.27869976012141 20.086650022029666 32.31898957262447 16.315660645224458 11 24.714838204337397 20.46531551378078 36.196455671415286 18.62339061046654 12 22.106525676800313 17.480540461154355 41.02217653106183 19.3907573309835 13 20.361776080677537 18.71640475840799 44.62108973417536 16.300729426739117 14 18.243501248347773 24.191511235129976 37.60390659421354 19.961080922308707 15 15.455769324913105 20.604347187545898 46.380281000636415 17.559602486904588 16 17.484456846330836 21.032212268076567 39.142066872276885 22.34126401331571 17 16.945464336417487 20.15053605522103 40.60630538013414 22.297694228227346 18 18.16223625593577 20.89073285357615 40.35149556958927 20.59553532089881 19 18.732315073187447 22.91452489352328 37.32437460224213 21.028785431047144 20 19.88887257061732 21.966759680814608 40.164732951485774 17.97963479708229 21 19.653644685954863 24.87100406324962 37.48421207225731 17.99113917853821 22 17.134429921182747 20.46433641748666 37.37357419102169 25.027659470308905 23 17.85822685661135 25.473882606354337 37.232094776521265 19.43579576051305 24 20.123855681206244 20.813629020414158 36.19816908992999 22.8643462084496 25 17.609781171978263 26.059382190238413 35.06462035541196 21.26621628237137 26 16.84412786997601 22.681010427375533 37.50966857590444 22.965193126744015 27 19.5133891418221 23.878934743231998 35.274636510500805 21.333039604445098 28 15.955353208988104 23.8253292211289 39.096538894600286 21.122778675282714 29 20.57252655798698 24.717775493219758 33.69829147696676 21.011406471826504 30 19.95838840749988 25.73285357614921 36.039555490282474 18.26920252606844 31 20.83786165369364 25.293484114162627 32.71968473099329 21.14896950115044 32 22.86140891956724 26.348949919224555 31.152641112253388 19.637000048954814 33 20.91423116463504 23.51201840701033 30.92622509423802 24.64752533411661 34 20.563225143192835 25.52430606550154 33.209232878053555 20.70323591325207 35 19.503353404807363 25.334606158515687 29.34498457923337 25.817055857443577 36 19.746414059822783 29.384393205071717 28.63954569931953 22.22964703578597 37 21.19180496401821 26.920986929064473 31.86224115141724 20.024966955500073 38 22.166250550741665 26.928574925343906 27.97694228227346 22.928232241640966 39 24.187350075879962 21.538160278063348 31.986341606697017 22.28814803935967 40 22.54393694619866 21.819895236696528 33.13824839672982 22.49791942037499 41 17.582366475742887 24.956430214911638 31.906545258726194 25.554658050619278 42 19.26959416458609 24.482792382630834 31.898222940226173 24.34939051255691 43 21.776080677534633 23.188427081803496 29.671023645175502 25.36446859548637 44 21.74205708131395 22.91917560092035 31.78856415528467 23.55020316248103 45 21.11714887159152 21.215548049150634 31.651735448181327 26.015567631076514 46 24.215009546188867 23.279238263083172 30.678513731825525 21.827238458902436 47 18.68336025848142 22.375042835462867 37.53267733881627 21.408919567239437 48 20.326528614089195 23.425123610907132 31.453468448621923 24.79487932638175 49 19.729769422822734 20.600186028295884 35.80163509081118 23.8684094580702 50 20.641797620796005 19.57066627502815 34.570911049101674 25.216625055074164 51 20.211484799530034 20.01860282958829 31.37342732657757 28.39648504430411 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 207.0 1 469.5 2 732.0 3 9173.5 4 17615.0 5 12180.0 6 6745.0 7 6425.5 8 6106.0 9 5919.0 10 5732.0 11 5500.5 12 5269.0 13 5039.0 14 4809.0 15 4412.5 16 4016.0 17 3743.5 18 3471.0 19 3214.5 20 2958.0 21 2859.5 22 2761.0 23 2580.0 24 2399.0 25 2446.0 26 2591.5 27 2690.0 28 3062.0 29 3434.0 30 3958.0 31 4482.0 32 4708.0 33 4934.0 34 5760.5 35 6587.0 36 7110.5 37 7634.0 38 8314.5 39 8995.0 40 10478.5 41 11962.0 42 13909.5 43 15857.0 44 18233.0 45 20609.0 46 37688.0 47 54767.0 48 46562.0 49 38357.0 50 37003.0 51 35649.0 52 30843.5 53 26038.0 54 23064.5 55 20091.0 56 18045.0 57 15999.0 58 15060.5 59 14122.0 60 13423.5 61 12725.0 62 11945.0 63 11165.0 64 9735.0 65 8305.0 66 7182.5 67 6060.0 68 5267.0 69 4474.0 70 3766.0 71 3058.0 72 2665.5 73 2273.0 74 1806.0 75 1039.5 76 740.0 77 564.5 78 389.0 79 301.5 80 214.0 81 165.0 82 116.0 83 98.0 84 80.0 85 58.0 86 36.0 87 32.0 88 28.0 89 19.0 90 10.0 91 7.0 92 4.0 93 3.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 408540.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.70278696704882 #Duplication Level Percentage of deduplicated Percentage of total 1 78.07907644160159 35.68431397194438 2 7.8528962286466175 7.17798486824355 3 3.437159681543274 4.712633300919049 4 2.211879157922088 4.043561678054742 5 1.727367391640486 3.9472751956985954 6 1.3269308306909868 3.6386662245047585 7 1.1055055166911303 3.5367278184162383 8 0.9209623373189992 3.3672436405732467 9 0.7294992544926582 3.000613411862901 >10 2.527219414311394 16.53130418871015 >50 0.04455538067696434 1.4040571796604107 >100 0.029884706551622328 2.2908432052294407 >500 0.0016300749028157634 0.5358958955973044 >1k 0.0032601498056315267 2.2386939290128356 >5k 0.0016300749028157634 5.129502140619981 >10k+ 5.433583009385878E-4 2.760683350952379 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11117 2.721153375434474 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCG 7658 1.8744798550937483 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGC 6613 1.618690948254761 No Hit GAATCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTC 6385 1.5628824594898907 No Hit GCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC 2565 0.6278454986047878 TruSeq Adapter, Index 20 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCT 1603 0.3923728398688011 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCT 1330 0.3255495177950751 No Hit CTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCT 1208 0.2956870808243991 TruSeq Adapter, Index 22 (95% over 23bp) GAATGATCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTC 1190 0.2912811475008567 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTA 1119 0.2739021882802174 No Hit CCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC 866 0.21197434767709403 TruSeq Adapter, Index 20 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCC 781 0.19116855142703285 No Hit TCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGC 511 0.12507955157389727 TruSeq Adapter, Index 20 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTT 415 0.10158124051500465 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3395016399862926 0.0 2 0.0 0.0 0.0 1.527879766975082 0.0 3 0.0 0.0 0.0 1.9031184216967738 0.0 4 0.0 0.0 0.0 2.7818573456699465 0.0 5 0.0 0.0 0.0 5.72526557986978 0.0 6 0.0 0.0 0.0 6.682821755519655 0.0 7 0.0 0.0 0.0 7.861408919567239 0.0 8 0.0 0.0 0.0 9.40495422724825 0.0 9 0.0 0.0 0.0 10.024477407353013 0.0 10 0.0 0.0 0.0 13.185245018847604 0.0 11 0.0 0.0 0.0 14.739560385763939 0.0 12 0.0 0.0 0.0 17.7701081901405 0.0 13 0.0 0.0 0.0 18.4070103294659 0.0 14 0.0 0.0 0.0 18.702207862143243 0.0 15 0.0 0.0 0.0 19.373623145836394 0.0 16 0.0 0.0 0.0 20.18382532922113 0.0 17 0.0 0.0 0.0 21.073089538356097 0.0 18 0.0 0.0 0.0 22.084985558329663 0.0 19 0.0 0.0 0.0 22.683702942184365 0.0 20 0.0 0.0 0.0 23.219513389141824 0.0 21 0.0 0.0 0.0 23.788613110099377 0.0 22 0.0 0.0 0.0 24.407646742057082 0.0 23 0.0 0.0 0.0 24.988740392617615 0.0 24 0.0 0.0 0.0 25.438390365692467 0.0 25 0.0 0.0 0.0 25.831497527781856 0.0 26 0.0 0.0 0.0 26.187399030694667 0.0 27 0.0 0.0 0.0 26.566554070592844 0.0 28 0.0 0.0 0.0 26.956234395652814 0.0 29 0.0 0.0 0.0 27.314338865227395 0.0 30 0.0 0.0 0.0 27.778430508640525 0.0 31 0.0 0.0 0.0 28.16297057815636 0.0 32 0.0 0.0 0.0 28.578352180936996 0.0 33 0.0 0.0 0.0 28.95750722083517 0.0 34 0.0 0.0 0.0 29.33568316443922 0.0 35 0.0 0.0 0.0 29.714348656190335 0.0 36 0.0 0.0 0.0 30.05507416654428 0.0 37 0.0 0.0 0.0 30.399960836148235 0.0 38 0.0 0.0 0.0 30.738238605766877 0.0 39 2.447740735301317E-4 0.0 0.0 31.099525138297352 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTACGA 30 2.1620526E-6 45.000004 10 TCTACGG 25 3.8863767E-5 45.0 2 CGAGATT 20 7.0279423E-4 45.0 22 TAGTCCG 20 7.0279423E-4 45.0 1 CGTTTTT 6095 0.0 44.0402 1 CGGGTAC 60 3.6379788E-12 41.250004 6 TACGGCT 790 0.0 40.727848 7 CACGACG 45 1.9230356E-8 40.0 26 TATGCGG 45 1.9230356E-8 40.0 2 CGGTCTA 45 1.9230356E-8 40.0 31 TGACGGG 120 0.0 39.375004 3 TTTAGCG 40 3.450932E-7 39.375 1 CACGGGT 40 3.450932E-7 39.375 4 ACGGGTA 40 3.450932E-7 39.375 5 CCGACTT 40 3.450932E-7 39.375 12 GCGAGAC 115 0.0 39.130436 21 GTTTTTT 7040 0.0 39.11932 2 CACGTGA 110 0.0 38.863636 43 TGGGTAC 145 0.0 38.793102 6 TTGATAG 35 6.238406E-6 38.571426 1 >>END_MODULE