SRR3552267_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552267_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495387
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20749	4.188442571161537	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	10232	2.0654558960973946	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	9568	1.9314192742239906	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	7833	1.5811880408650207	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	3678	0.7424498422445482	RNA PCR Primer, Index 27 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	2824	0.570059367726646	RNA PCR Primer, Index 27 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGACTATGT	1597	0.3223742245961238	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTA	1307	0.26383413371767933	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	1128	0.22770076727891528	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC	1017	0.20529404283923477	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	596	0.12030997987432049	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	507	0.1023442278461082	RNA PCR Primer, Index 38 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	30	2.1629912E-6	45.000004	1
GCGCATG	20	7.029396E-4	45.0	1
CCGTCGG	25	3.8875813E-5	45.0	2
CACCCGT	20	7.029396E-4	45.0	16
TAGTACG	20	7.029396E-4	45.0	1
TGCGTAG	20	7.029396E-4	45.0	1
CGTTTTT	9070	0.0	43.83407	1
ACGGGTA	95	0.0	42.63158	5
AACACGT	70	0.0	41.785713	41
ACGGGCT	120	0.0	41.250004	5
TACGGCT	975	0.0	39.692307	7
TCGAGCG	40	3.4529148E-7	39.375	1
TCGTTCA	75	0.0	39.0	16
GTTTTTT	10400	0.0	38.834137	2
GTTGATC	105	0.0	38.57143	16
CACGGGC	105	0.0	38.57143	4
GTGCACG	70	0.0	38.571426	1
CGTATGG	35	6.2410927E-6	38.571426	2
CGAGACA	70	0.0	38.571426	22
ACGGCTG	1015	0.0	38.128082	8