SRR3552266_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552266_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	549396
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21950	3.995296653051715	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	17290	3.1470924433377747	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	14645	2.665654646193274	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	10526	1.9159222127572824	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	4371	0.7956009872660158	RNA PCR Primer, Index 27 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	4023	0.7322586986436014	RNA PCR Primer, Index 27 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	2337	0.4253762313522486	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC	1941	0.35329707533363913	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTA	1256	0.22861469686710498	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	1091	0.19858171519268436	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	618	0.11248716772601183	RNA PCR Primer, Index 38 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCT	20	7.0300663E-4	45.000004	11
CATACGA	20	7.0300663E-4	45.000004	18
CGTCATA	20	7.0300663E-4	45.000004	39
TCGTCGG	25	3.8881375E-5	45.0	2
AATACGG	25	3.8881375E-5	45.0	2
TGCGACG	30	2.1634241E-6	44.999996	1
CGTTTTT	9920	0.0	44.274197	1
TACGGCT	1475	0.0	41.0339	7
CGTTCAT	55	6.002665E-11	40.909092	17
CACGACC	105	0.0	40.714287	27
CGAGACA	100	0.0	40.5	22
TCAAGCG	100	0.0	40.5	17
AACACGT	95	0.0	40.263157	41
CCCTCGT	90	0.0	40.0	14
TCGTGTA	85	0.0	39.705883	17
CGTGTAC	85	0.0	39.705883	18
GTTTTTT	11230	0.0	39.65049	2
ACGGCTG	1550	0.0	39.048386	8
GAATCTG	2225	0.0	39.03371	1
ACACGAC	105	0.0	38.57143	26