SRR3552265_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552265_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	252111
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10165	4.0319541789132565	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG	4494	1.7825481633090186	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC	4257	1.6885419517593443	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	3277	1.2998242837480316	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1691	0.6707363026603361	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAGTGTGT	1048	0.41568991436311786	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTA	1018	0.4037903939137919	No Hit
GAACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT	1012	0.4014104898239268	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCT	582	0.23085069671692232	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	571	0.22648753921883616	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTC	522	0.2070516558182705	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	397	0.15747032061274596	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGT	301	0.11939185517490312	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC	287	0.11383874563188437	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTAT	259	0.10273252654584687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCA	20	7.0228014E-4	45.0	34
TCGTTCA	20	7.0228014E-4	45.0	16
ACACGAG	20	7.0228014E-4	45.0	37
ACACGAC	20	7.0228014E-4	45.0	26
ACGCCCG	20	7.0228014E-4	45.0	21
GTATTAG	20	7.0228014E-4	45.0	1
CAACGAG	25	3.8821167E-5	45.0	14
ACGCATG	20	7.0228014E-4	45.0	1
CACGACC	20	7.0228014E-4	45.0	27
CCGCTTG	25	3.8821167E-5	45.0	39
TAACGGG	25	3.8821167E-5	45.0	3
CGTTCAT	20	7.0228014E-4	45.0	17
GTTACGG	20	7.0228014E-4	45.0	2
TCTACGG	20	7.0228014E-4	45.0	2
TGATTGG	25	3.8821167E-5	45.0	2
TACTGAC	20	7.0228014E-4	45.0	20
AACGAGC	25	3.8821167E-5	45.0	15
CGAATAG	25	3.8821167E-5	45.0	26
ACTGTCG	25	3.8821167E-5	45.0	25
CGAGACA	20	7.0228014E-4	45.0	22