##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552265_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 252111 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.926508561704964 25.0 16.0 30.0 16.0 33.0 2 24.794951430124033 28.0 16.0 31.0 16.0 33.0 3 26.073963452606193 30.0 19.0 31.0 16.0 33.0 4 26.88325777137848 28.0 19.0 35.0 19.0 35.0 5 29.54817124203228 32.0 28.0 35.0 19.0 35.0 6 28.755786141818486 33.0 25.0 35.0 15.0 35.0 7 30.49479395980342 32.0 28.0 35.0 23.0 35.0 8 32.13157696411501 35.0 32.0 35.0 26.0 37.0 9 32.96821638087985 35.0 32.0 37.0 26.0 39.0 10 31.903209300665182 35.0 28.0 37.0 17.0 39.0 11 32.66568297297619 35.0 31.0 39.0 18.0 39.0 12 32.70656972524007 35.0 30.0 39.0 22.0 39.0 13 33.158406416221425 35.0 31.0 38.0 25.0 39.0 14 32.868153313421466 36.0 31.0 39.0 18.0 41.0 15 33.693849137879745 36.0 31.0 39.0 25.0 41.0 16 33.86366322770526 36.0 32.0 39.0 23.0 41.0 17 31.855670716470126 34.0 27.0 38.0 18.0 41.0 18 32.643537965419995 35.0 30.0 39.0 18.0 39.0 19 32.54261813248926 36.0 30.0 37.0 18.0 40.0 20 32.75625418962282 35.0 30.0 37.0 25.0 39.0 21 33.36344705308376 35.0 32.0 38.0 25.0 39.0 22 34.02266065344233 35.0 32.0 38.0 27.0 40.0 23 35.01491803213664 36.0 33.0 39.0 29.0 40.0 24 32.89757289447902 35.0 31.0 37.0 24.0 39.0 25 32.04933937828972 35.0 30.0 38.0 19.0 39.0 26 31.91500569193728 34.0 29.0 37.0 21.0 39.0 27 33.336105921598026 35.0 31.0 38.0 24.0 39.0 28 33.72062702539754 35.0 33.0 38.0 24.0 40.0 29 33.94875669843839 36.0 33.0 39.0 24.0 40.0 30 32.38057839602397 35.0 30.0 38.0 20.0 40.0 31 32.601766682136045 35.0 30.0 38.0 22.0 40.0 32 32.58293370777157 35.0 31.0 38.0 21.0 40.0 33 32.92635386793912 35.0 32.0 38.0 20.0 40.0 34 32.1845020645668 35.0 31.0 38.0 16.0 40.0 35 32.03042310728211 35.0 31.0 38.0 15.0 40.0 36 31.399125781897656 35.0 30.0 38.0 10.0 40.0 37 31.660102097885456 35.0 31.0 38.0 10.0 40.0 38 31.20721031609093 35.0 30.0 38.0 10.0 40.0 39 30.977509906350775 35.0 29.0 38.0 10.0 40.0 40 30.714875590513703 35.0 28.0 38.0 10.0 40.0 41 30.47706764084074 35.0 27.0 38.0 10.0 40.0 42 31.285663854413333 35.0 30.0 38.0 10.0 40.0 43 31.334114735176172 35.0 30.0 38.0 10.0 40.0 44 31.508851259960892 35.0 30.0 38.0 10.0 40.0 45 31.821344566480636 35.0 31.0 39.0 10.0 40.0 46 31.632269119554483 35.0 30.0 39.0 10.0 40.0 47 31.618664001174086 35.0 30.0 39.0 10.0 40.0 48 31.44454625145273 35.0 30.0 38.0 10.0 40.0 49 31.50344491117008 35.0 31.0 38.0 10.0 40.0 50 31.561026690624367 35.0 31.0 39.0 10.0 40.0 51 29.958137487059272 34.0 27.0 37.0 10.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 10.0 9 14.0 10 32.0 11 25.0 12 34.0 13 45.0 14 55.0 15 80.0 16 166.0 17 325.0 18 588.0 19 986.0 20 1490.0 21 2195.0 22 3263.0 23 4488.0 24 6420.0 25 8795.0 26 10139.0 27 10687.0 28 11325.0 29 12822.0 30 15328.0 31 19264.0 32 24560.0 33 30827.0 34 36037.0 35 31531.0 36 15966.0 37 4250.0 38 357.0 39 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.72500604892289 14.841081904399253 18.141215575678967 28.292696470998884 2 43.61412235086926 21.536148759871644 19.261357100642176 15.58837178861692 3 25.61173451376576 20.433459864900776 38.85748737659206 15.097318244741404 4 22.410366862215454 19.089210704808597 43.351936250302444 15.148486182673505 5 24.50745901606832 22.050604693964164 37.51720472331632 15.924731566651198 6 19.769466623828393 27.91786157684512 37.842061631582915 14.470610167743573 7 58.83162575214885 4.528957483013434 32.79944151584024 3.8399752489974652 8 58.251325804903395 9.229664711178806 26.82231239414385 5.696697089773949 9 53.184509997580435 5.170738285913744 28.283970156002713 13.360781560503113 10 31.143424919975725 18.800845659253266 34.90724323809751 15.148486182673505 11 24.537207817191632 20.184363236828222 39.023684012200974 16.25474493377917 12 20.4524990976197 17.21820943949292 43.184153011966956 19.145138450920427 13 19.659197734331308 18.781806426534345 46.717120633371806 14.841875205762541 14 17.99802467960541 21.952235324916405 41.14060870013605 18.909131295342128 15 15.166732114029138 19.275239874499725 48.06533630028043 17.492691711190705 16 16.795379812860208 19.313318339937567 41.67410386694749 22.21719798025473 17 17.015124290491094 19.029316451880323 43.87948165688923 20.076077600739357 18 17.96192946757579 18.919047562383238 43.32893051076708 19.790092459273893 19 17.86712995466283 21.47625450694337 41.03073646132061 19.625879077073193 20 18.55928539413195 20.34183355744097 44.475647631400456 16.62323341702663 21 18.832974364466445 23.17114286960902 41.02478670109594 16.971096064828586 22 16.84853100420053 18.6037102704761 42.231794725339235 22.315963999984135 23 16.852894161698618 23.5792964210209 41.50116416975062 18.06664524752986 24 18.78339302926092 19.843243650614216 40.4230676170417 20.950295703083167 25 16.472109507320187 23.255629464799235 39.768593992328775 20.5036670355518 26 15.757344978997345 20.183569935464934 42.72086501580653 21.33822006973119 27 17.84967732467048 21.269202851125097 40.177937495785585 20.70318232841883 28 15.42772826255102 21.571450670537978 44.16507014767305 18.835750919237952 29 19.26056379927889 18.975371959176712 41.413107718425614 20.350956523118786 30 17.328874979671653 20.941569388086993 41.93708326887759 19.792472363363757 31 20.90745742946559 21.496483691707226 37.78097742660971 19.815081452217477 32 20.362459392886468 22.871274954286008 38.481859181075 18.284406471752522 33 18.924204021244613 20.495337371237273 37.307376512726535 23.27308209479158 34 21.444522452411835 21.996660201260557 38.32438886046226 18.234428485865354 35 19.036059513468274 20.8761220256157 36.54501390260639 23.542804558309633 36 21.268806200443453 23.37779787474565 36.27648139113327 19.076914533677627 37 21.906620496527324 23.22231080754112 34.575643268242956 20.2954254276886 38 20.523102918952365 25.929451709762763 34.448318399435166 19.0991269718497 39 25.914775634541925 20.921736854004784 34.28648492132434 18.877002590128953 40 21.15774400958308 20.719445006366243 39.519497364256225 18.603313619794456 41 23.246903149803064 23.076343356696057 33.82993998675187 19.84681350674901 42 20.40728091991226 22.594809429180003 37.21376695185851 19.78414269904923 43 23.515435661276186 21.07167081166629 34.109578717311024 21.303314809746503 44 21.525835842148894 21.666646834132585 34.68591215774005 22.12160516597848 45 20.251793852707735 21.10578277028769 35.49309629488599 23.14932708211859 46 23.81570022728084 22.296924767265214 34.983796819654835 18.903578185799113 47 18.595777256843217 20.742054095219963 41.35242016413405 19.309748483802768 48 20.711115342051713 22.676916120280353 34.99529968942252 21.616668848245414 49 19.656024528878152 20.178810127285203 39.39137919408515 20.7737861497515 50 20.67660673274867 19.316888196072366 37.23478943798565 22.771715633193317 51 20.049502005069193 19.909484314448793 34.78666143087767 25.254352249604338 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 342.5 2 566.0 3 8420.5 4 16275.0 5 11058.0 6 5841.0 7 5307.5 8 4774.0 9 4546.5 10 4319.0 11 4126.5 12 3934.0 13 3670.0 14 3406.0 15 3134.5 16 2863.0 17 2640.5 18 2418.0 19 2177.5 20 1937.0 21 1906.0 22 1875.0 23 1845.5 24 1816.0 25 1863.5 26 2033.0 27 2155.0 28 2319.5 29 2484.0 30 2831.5 31 3179.0 32 3429.5 33 3680.0 34 3991.0 35 4302.0 36 4582.0 37 4862.0 38 5248.0 39 5634.0 40 6342.5 41 7051.0 42 7877.0 43 8703.0 44 10098.5 45 11494.0 46 20815.0 47 30136.0 48 25807.5 49 21479.0 50 20880.0 51 20281.0 52 17586.0 53 14891.0 54 13133.5 55 11376.0 56 10476.0 57 9576.0 58 8630.0 59 7684.0 60 7494.5 61 7305.0 62 6670.0 63 6035.0 64 5465.5 65 4896.0 66 4317.0 67 3738.0 68 3270.5 69 2803.0 70 2455.0 71 2107.0 72 1870.0 73 1633.0 74 1359.0 75 923.0 76 761.0 77 559.0 78 357.0 79 285.5 80 214.0 81 154.5 82 95.0 83 69.0 84 43.0 85 26.0 86 9.0 87 7.0 88 5.0 89 3.0 90 1.0 91 2.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 252111.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.610794285273016 #Duplication Level Percentage of deduplicated Percentage of total 1 73.16594549026566 33.37156888444006 2 10.96109281519458 9.998882990712483 3 5.027331903177563 6.879018037188659 4 3.246440950349512 5.922910013827113 5 2.2595859978846287 5.153075605969958 6 1.5287313159168807 4.183598974064374 7 1.0865028898318052 3.4689381858931188 8 0.7279014763660514 2.6560131598782792 9 0.5149651222664459 2.1139171430206796 >10 1.3903936905009688 9.627722049917194 >50 0.053476639187817684 1.6287847838078402 >100 0.026738319593908842 2.060597943353125 >500 0.0029709243993232045 0.7565764040150118 >1k 0.006932156931754143 7.586993348203077 >5k 0.0 0.0 >10k+ 9.903081331077348E-4 4.591402475709012 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10165 4.0319541789132565 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG 4494 1.7825481633090186 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC 4257 1.6885419517593443 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC 3277 1.2998242837480316 No Hit GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 1691 0.6707363026603361 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAGTGTGT 1048 0.41568991436311786 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTA 1018 0.4037903939137919 No Hit GAACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT 1012 0.4014104898239268 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCT 582 0.23085069671692232 No Hit CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 571 0.22648753921883616 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTC 522 0.2070516558182705 No Hit CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 397 0.15747032061274596 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGT 301 0.11939185517490312 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC 287 0.11383874563188437 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTAT 259 0.10273252654584687 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24552677193775757 0.0 2 0.0 0.0 0.0 1.282371653755687 0.0 3 0.0 0.0 0.0 1.577479760898969 0.0 4 0.0 0.0 0.0 2.3882337541797067 0.0 5 0.0 0.0 0.0 4.562672790953191 0.0 6 0.0 0.0 0.0 5.152095703876467 0.0 7 0.0 0.0 0.0 5.94539706716486 0.0 8 0.0 0.0 0.0 6.977085490121415 0.0 9 0.0 0.0 0.0 7.389205548349735 0.0 10 0.0 0.0 0.0 10.076117265807522 0.0 11 0.0 0.0 0.0 11.212918119399788 0.0 12 0.0 0.0 0.0 14.023981500212209 0.0 13 0.0 0.0 0.0 14.58365561201217 0.0 14 0.0 0.0 0.0 14.863294342571328 0.0 15 0.0 0.0 0.0 15.661355514039451 0.0 16 0.0 0.0 0.0 16.304326268984692 0.0 17 0.0 0.0 0.0 17.07144868728457 0.0 18 0.0 0.0 0.0 17.89489550237792 7.933013632883928E-4 19 0.0 0.0 0.0 18.790532741530516 7.933013632883928E-4 20 0.0 0.0 0.0 19.288329346993983 7.933013632883928E-4 21 0.0 0.0 0.0 19.776209685416344 7.933013632883928E-4 22 3.966506816441964E-4 0.0 0.0 20.32993403699164 7.933013632883928E-4 23 3.966506816441964E-4 0.0 0.0 20.811467964507695 7.933013632883928E-4 24 3.966506816441964E-4 0.0 0.0 21.193839221612702 7.933013632883928E-4 25 3.966506816441964E-4 0.0 0.0 21.503226753295177 7.933013632883928E-4 26 3.966506816441964E-4 0.0 0.0 21.8399831820111 7.933013632883928E-4 27 3.966506816441964E-4 0.0 0.0 22.169599898457424 7.933013632883928E-4 28 3.966506816441964E-4 0.0 0.0 22.49723336149553 7.933013632883928E-4 29 3.966506816441964E-4 0.0 0.0 22.814157256129246 7.933013632883928E-4 30 3.966506816441964E-4 0.0 0.0 23.177885931196972 7.933013632883928E-4 31 3.966506816441964E-4 0.0 0.0 23.485686860152867 7.933013632883928E-4 32 3.966506816441964E-4 0.0 0.0 23.820856686142214 7.933013632883928E-4 33 3.966506816441964E-4 0.0 0.0 24.156423162813205 7.933013632883928E-4 34 3.966506816441964E-4 0.0 0.0 24.461844187679237 7.933013632883928E-4 35 3.966506816441964E-4 0.0 0.0 24.795427410942004 7.933013632883928E-4 36 3.966506816441964E-4 0.0 0.0 25.113144606939006 7.933013632883928E-4 37 3.966506816441964E-4 0.0 0.0 25.43006850157272 7.933013632883928E-4 38 3.966506816441964E-4 0.0 0.0 25.73429957439382 7.933013632883928E-4 39 3.966506816441964E-4 0.0 0.0 26.046463660847802 7.933013632883928E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCA 20 7.0228014E-4 45.0 34 TCGTTCA 20 7.0228014E-4 45.0 16 ACACGAG 20 7.0228014E-4 45.0 37 ACACGAC 20 7.0228014E-4 45.0 26 ACGCCCG 20 7.0228014E-4 45.0 21 GTATTAG 20 7.0228014E-4 45.0 1 CAACGAG 25 3.8821167E-5 45.0 14 ACGCATG 20 7.0228014E-4 45.0 1 CACGACC 20 7.0228014E-4 45.0 27 CCGCTTG 25 3.8821167E-5 45.0 39 TAACGGG 25 3.8821167E-5 45.0 3 CGTTCAT 20 7.0228014E-4 45.0 17 GTTACGG 20 7.0228014E-4 45.0 2 TCTACGG 20 7.0228014E-4 45.0 2 TGATTGG 25 3.8821167E-5 45.0 2 TACTGAC 20 7.0228014E-4 45.0 20 AACGAGC 25 3.8821167E-5 45.0 15 CGAATAG 25 3.8821167E-5 45.0 26 ACTGTCG 25 3.8821167E-5 45.0 25 CGAGACA 20 7.0228014E-4 45.0 22 >>END_MODULE